PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC11G08590.3

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 894aa MW: 98498.3 Da PI: 5.5926

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC11G08590.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	94.1	1e-29	532	582	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ OPUNC11G08590.3 532 EKSISLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 582 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.427	521	602	IPR003035	RWP-RK domain
Pfam	PF02042	4.1E-26	535	582	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.47E-23	783	875	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.1E-24	787	869	No hit	No description
PROSITE profile	PS51745	26.302	790	872	IPR000270	PB1 domain
SMART	SM00666	1.7E-25	790	872	IPR000270	PB1 domain
Pfam	PF00564	3.4E-19	791	871	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 894 aa Download sequence Send to blast
MDGGGGTPDG DPVSDMDMLM LSSAFDGLES YTDLVAGPSV ADSIFSALTC FPPPPPQQLL 60 HISTPVGSNS KQDGADVSIT EDDGTRSDRA AGLALGEVVA AGMGSVPKPF DVVTLTERML 120 RALAMLKEAS GGEVILVQVW MPVRNGEQQV LTTSDQPFLL DQNLTGYREV SRQFTFSAEE 180 GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYARH HEVRGSLAMP VFNSSGGSCC 240 AVLEVVMTRE KDNFCLEMVN VSNALQSYSR NQKLALMEIF DVLQAVCQAH LLPLALAWIP 300 VCSKRDVHVS VEYGAKFGKR NKEVLCIEES ACYVNDMRMR DFVQVCAEHP LEKGQGVAGN 360 AYLSNNPFFS SDVKDYDMHA YPLVNHARKF GLRAAVAIRL RSTYTKNDDY VLEFFLPVLC 420 KGGEEQQLLL DSISATMRKV CKSLRTVSDA ELKEDATRQP SNENRSGTRC PSPVNLIYSG 480 QEIDVSNETK TNTPLEYQIE SIDEQLADAK STNKLIKCSN ASDGEKRRSS TEKSISLSVL 540 QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIK KVNRSLKKIQ NVISSVHGVE 600 GVLKYDPSTG CLVSSVSPSI EPVLMNVDHR GSDPLPIESE LPHLNFEPNR DAYRREHVGQ 660 DVHELQNEQN GAIDFDVDDG GLFRNSHSTR TLSGRFCEDI PNGLYVAREM TCAAKTGTRT 720 ERLEHKPSSR DSFSTPQECR MESETDKSNK NAKQSLPSSS SMTDCSSGGT SSGETFKSIK 780 SKSANESNTT IVVKASYKND TVRFKLLPSM KYEQLLEEIA KRLKLSVGVF QLKYKDDEGD 840 WVILASDADL QECLEILDTT RLHILKLQVQ DVVCPTGSSS ERCGFGSTVI DLFL

Sequence ? help Back to Top

Protein Sequence Length: 894 aa Download sequence Send to blast

MDGGGGTPDG DPVSDMDMLM LSSAFDGLES YTDLVAGPSV ADSIFSALTC FPPPPPQQLL  60
HISTPVGSNS KQDGADVSIT EDDGTRSDRA AGLALGEVVA AGMGSVPKPF DVVTLTERML  120
RALAMLKEAS GGEVILVQVW MPVRNGEQQV LTTSDQPFLL DQNLTGYREV SRQFTFSAEE  180
GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYARH HEVRGSLAMP VFNSSGGSCC  240
AVLEVVMTRE KDNFCLEMVN VSNALQSYSR NQKLALMEIF DVLQAVCQAH LLPLALAWIP  300
VCSKRDVHVS VEYGAKFGKR NKEVLCIEES ACYVNDMRMR DFVQVCAEHP LEKGQGVAGN  360
AYLSNNPFFS SDVKDYDMHA YPLVNHARKF GLRAAVAIRL RSTYTKNDDY VLEFFLPVLC  420
KGGEEQQLLL DSISATMRKV CKSLRTVSDA ELKEDATRQP SNENRSGTRC PSPVNLIYSG  480
QEIDVSNETK TNTPLEYQIE SIDEQLADAK STNKLIKCSN ASDGEKRRSS TEKSISLSVL  540
QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIK KVNRSLKKIQ NVISSVHGVE  600
GVLKYDPSTG CLVSSVSPSI EPVLMNVDHR GSDPLPIESE LPHLNFEPNR DAYRREHVGQ  660
DVHELQNEQN GAIDFDVDDG GLFRNSHSTR TLSGRFCEDI PNGLYVAREM TCAAKTGTRT  720
ERLEHKPSSR DSFSTPQECR MESETDKSNK NAKQSLPSSS SMTDCSSGGT SSGETFKSIK  780
SKSANESNTT IVVKASYKND TVRFKLLPSM KYEQLLEEIA KRLKLSVGVF QLKYKDDEGD  840
WVILASDADL QECLEILDTT RLHILKLQVQ DVVCPTGSSS ERCGFGSTVI DLFL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064859	0.0	AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616880.1	0.0	protein NLP2-like isoform X1
Refseq	XP_015616881.1	0.0	protein NLP2-like isoform X1
TrEMBL	A0A0E0MEH4	0.0	A0A0E0MEH4_ORYPU; Uncharacterized protein
STRING	OPUNC11G08590.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-174	Nin-like family protein