PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G10450.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 436aa    MW: 44867 Da    PI: 6.0497
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G10450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.0001586108123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +C+k F ++     H+r+H
  OPUNC11G10450.1  86 FACRICHKEFDTRKAVDGHMRVH 108
                      78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.07E-585108No hitNo description
PROSITE profilePS501579.97286113IPR007087Zinc finger, C2H2
PfamPF139120.03486110IPR007087Zinc finger, C2H2
SMARTSM003550.005986108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-4193223IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.07E-5194223No hitNo description
PfamPF139120.02199220IPR007087Zinc finger, C2H2
PROSITE profilePS501579.12199228IPR007087Zinc finger, C2H2
SMARTSM003550.12199223IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280201223IPR007087Zinc finger, C2H2
PfamPF139122.4E-5257280IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577257284IPR007087Zinc finger, C2H2
SMARTSM003559.8257279IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280259279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MEGDLHDEIE KGETDDEDEH HRRAVLRRSH DDDEGCTEYK RRRLENTATA PAPSAGSVLT  60
TSNGGVIVAA IAAAAAAAPT GARELFACRI CHKEFDTRKA VDGHMRVHRK HAIATPKDDD  120
ADNSRVTVVA EPRTDVDLSG GQGSSSAPRI PTVAPPAINP LNHNQAVDHQ PAVAEPNASA  180
ADHHAPLVVE GAPQQSQAYR CKVQGCGRVF STHQGLGGHA AGHLNRIKAA AAASEQGQGS  240
SAAGAAVCHG GAGNGKHPCR ECGQEWNTGV ALGGHMRKHQ NKEKVTMNKK ELNVAGKCLS  300
LGPSPSPELT PAGAEEAALP PVDQPLLSVV VGAEFAAPAL LAFAADEAAA LQPHVHQAEA  360
EAVAEAAALA LLPAAAEAAA LPPVESGAEA ADDGAAPAAP LPAPIAGMGT VRIFGFLVEK  420
PAPDPAAEER VQRLNR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13943KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616778.11e-138myristoylated alanine-rich C-kinase substrate
TrEMBLA0A0E0MF520.0A0A0E0MF52_ORYPU; Uncharacterized protein
STRINGOPUNC11G10450.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP171081012