PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G11150.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 573aa    MW: 61041.8 Da    PI: 8.8493
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G11150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-10188211326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      ++ C++++rtG C++G +CkF+H+
  OPUNC11G11150.1 188 EPDCSYYMRTGLCRFGMTCKFNHP 211
                      789********************8 PP
2zf-CCCH38.42.1e-12233257327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  OPUNC11G11150.1 233 QPECQYYLKTGTCKFGATCKFHHPR 257
                      799********************96 PP
3zf-CCCH36.21e-11279303327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+G++CkF+H++
  OPUNC11G11150.1 279 EKECAYYLRTGQCKFGSTCKFHHPQ 303
                      679********************97 PP
4zf-CCCH39.11.2e-12440465227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  OPUNC11G11150.1 440 DQPECQFYMKTGDCKFGAVCKFHHPK 465
                      689*********************96 PP
5zf-CCCH382.8e-12485511127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  OPUNC11G11150.1 485 PGEPICTFYSRYGICKFGPNCKFDHPM 511
                      5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-4185212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.868185213IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-8188211IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5190213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4191212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244230258IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6230257IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-10233257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6233259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-5236258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619276304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6276304IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5276303IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9279303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4282302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511438466IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5438465IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9440465IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5441466IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4444465IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6483510IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7484511IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178484512IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9486511IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4489509IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MLARPRGGEK KRGREEQNDW LSERGRLVPL IPLPSSSSSS SASSSTLTPA RVHATARRSD  60
AAAAVAAAGA AVMAAAPSAG ATAAGAGVGG GVGEGSSSSA AAAATIVPHV VDEVRDGLQY  120
VFNPAVQATP LMGRISFSAA REGLSAAATA VAVAASVIGP HSSDEEAMWQ MNLGEAMEAG  180
PYPERIGEPD CSYYMRTGLC RFGMTCKFNH PADRKMAVAA ARMKGEYPQR IGQPECQYYL  240
KTGTCKFGAT CKFHHPREKA AMATRVQLNA LGYPLRPNEK ECAYYLRTGQ CKFGSTCKFH  300
HPQPSNAMVA VRGSVYSPGQ SVTSPSQHTY PGAVTNWPLS RSASFIASPR WPGHSSYAQV  360
IVPPGLVQVP GWNPYAAQIG SSSSDDQQRT AGGAQYYTGS RHSETPNMGD QGMFSSYQAG  420
SVPLGLYTVQ RESIFPERPD QPECQFYMKT GDCKFGAVCK FHHPKERIIP TPNCALSSLG  480
LPLRPGEPIC TFYSRYGICK FGPNCKFDHP MGTVMYGLAT SPTGDVSARR MLAPVPAHSE  540
VSPDNVSGRS RRITHSDSQQ IPSGERGTER EAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617448.20.0zinc finger CCCH domain-containing protein 63 isoform X2
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0E0MFC80.0A0A0E0MFC8_ORYPU; Uncharacterized protein
STRINGOPUNC11G11150.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-156zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]