PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G11150.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 498aa    MW: 53990.9 Da    PI: 9.0301
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G11150.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.29.1e-11113136326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      ++ C++++rtG C++G +CkF+H+
  OPUNC11G11150.2 113 EPDCSYYMRTGLCRFGMTCKFNHP 136
                      789********************8 PP
2zf-CCCH38.61.8e-12158182327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  OPUNC11G11150.2 158 QPECQYYLKTGTCKFGATCKFHHPR 182
                      799********************96 PP
3zf-CCCH36.48.7e-12204228327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+G++CkF+H++
  OPUNC11G11150.2 204 EKECAYYLRTGQCKFGSTCKFHHPQ 228
                      679********************97 PP
4zf-CCCH39.31e-12365390227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  OPUNC11G11150.2 365 DQPECQFYMKTGDCKFGAVCKFHHPK 390
                      689*********************96 PP
5zf-CCCH38.22.4e-12410436127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  OPUNC11G11150.2 410 PGEPICTFYSRYGICKFGPNCKFDHPM 436
                      5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-4110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.868110138IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-8113136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5115138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4116137IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6155182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244155183IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-10158182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6158184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5161183IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5201228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619201229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6201229IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9204228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4207227IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5363390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511363391IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9365390IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5366391IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4369390IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6408435IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7409436IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178409437IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9411436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4414434IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MLARPRGGEK KRGREEQNDW LSERGRLVPL IPLPSSSSSS SASSSTLTPA RVHATARRSD  60
AAAAVAAAGA AGSSSSAAAA ATIVPHVVDE EAMWQMNLGE AMEAGPYPER IGEPDCSYYM  120
RTGLCRFGMT CKFNHPADRK MAVAAARMKG EYPQRIGQPE CQYYLKTGTC KFGATCKFHH  180
PREKAAMATR VQLNALGYPL RPNEKECAYY LRTGQCKFGS TCKFHHPQPS NAMVAVRGSV  240
YSPGQSVTSP SQHTYPGAVT NWPLSRSASF IASPRWPGHS SYAQVIVPPG LVQVPGWNPY  300
AAQIGSSSSD DQQRTAGGAQ YYTGSRHSET PNMGDQGMFS SYQAGSVPLG LYTVQRESIF  360
PERPDQPECQ FYMKTGDCKF GAVCKFHHPK ERIIPTPNCA LSSLGLPLRP GEPICTFYSR  420
YGICKFGPNC KFDHPMGTVM YGLATSPTGD VSARRMLAPV PAHSEVSPDN VSGRSRRITH  480
SDSQQIPSGE RGTEREAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617449.10.0zinc finger CCCH domain-containing protein 63 isoform X1
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0E0MFC90.0A0A0E0MFC9_ORYPU; Uncharacterized protein
STRINGOPUNC11G11150.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-157zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]