PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G11150.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 521aa    MW: 55801.9 Da    PI: 8.9414
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G11150.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.19.6e-11136159326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      ++ C++++rtG C++G +CkF+H+
  OPUNC11G11150.3 136 EPDCSYYMRTGLCRFGMTCKFNHP 159
                      789********************8 PP
2zf-CCCH38.51.9e-12181205327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  OPUNC11G11150.3 181 QPECQYYLKTGTCKFGATCKFHHPR 205
                      799********************96 PP
3zf-CCCH36.39.2e-12227251327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+G++CkF+H++
  OPUNC11G11150.3 227 EKECAYYLRTGQCKFGSTCKFHHPQ 251
                      679********************97 PP
4zf-CCCH39.31.1e-12388413227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  OPUNC11G11150.3 388 DQPECQFYMKTGDCKFGAVCKFHHPK 413
                      689*********************96 PP
5zf-CCCH38.12.5e-12433459127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  OPUNC11G11150.3 433 PGEPICTFYSRYGICKFGPNCKFDHPM 459
                      5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.868133161IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4133160IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-8136159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5138161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4139160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244178206IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6178205IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6181207IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-10181205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5184206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6224252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619224252IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5224251IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9227251IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4230250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511386414IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5386413IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9388413IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5389414IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4392413IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6431458IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178432460IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7432459IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9434459IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4437457IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MLARPRGGEK KRGREEQNDW LSERGRLVPL IPLPSSSSSS SASSSTLTPA RVHATARRSD  60
AAAAVAAAGA AVMAAAPSAG ATAAGAGVGG GVGEGSSSSA AAAATIVPHV VDEEAMWQMN  120
LGEAMEAGPY PERIGEPDCS YYMRTGLCRF GMTCKFNHPA DRKMAVAAAR MKGEYPQRIG  180
QPECQYYLKT GTCKFGATCK FHHPREKAAM ATRVQLNALG YPLRPNEKEC AYYLRTGQCK  240
FGSTCKFHHP QPSNAMVAVR GSVYSPGQSV TSPSQHTYPG AVTNWPLSRS ASFIASPRWP  300
GHSSYAQVIV PPGLVQVPGW NPYAAQIGSS SSDDQQRTAG GAQYYTGSRH SETPNMGDQG  360
MFSSYQAGSV PLGLYTVQRE SIFPERPDQP ECQFYMKTGD CKFGAVCKFH HPKERIIPTP  420
NCALSSLGLP LRPGEPICTF YSRYGICKFG PNCKFDHPMG TVMYGLATSP TGDVSARRML  480
APVPAHSEVS PDNVSGRSRR ITHSDSQQIP SGERGTEREA S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617449.10.0zinc finger CCCH domain-containing protein 63 isoform X1
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0E0MFD00.0A0A0E0MFD0_ORYPU; Uncharacterized protein
STRINGOPUNC11G11150.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-157zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]