PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G11990.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 215aa    MW: 23249.8 Da    PI: 8.1349
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G11990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP44.73.5e-142324878
                     SEEETTT--SS--S-STTTT-------S--- CS
              SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78
                     +fh+l efD++k+sCr+rL++hn+rrrk+q+
  OPUNC11G11990.1  2 KFHNLAEFDDGKKSCRKRLDGHNRRRRKPQH 32
                     8***************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114113.99130IPR004333Transcription factor, SBP-box
PfamPF031104.4E-8229IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.34E-11234IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MKFHNLAEFD DGKKSCRKRL DGHNRRRRKP QHDALNPRSF LPYQQANQFS VYPQTFPIAD  60
QNTDALMHPL DRHPPFSISF SGTFRAPKQF PFLQDGSSGL STSRHDLLRP FSSPEDGANI  120
TTTRSACNGV PHGLDPECAL SLLSSSLHPS PAAGISSATA PAQFAPSSFS RIAASSQAVT  180
TAFASDGGSV AGDHVLVPAV TYEDPSQALP FSWQV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11229KKSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1336080.0AC133608.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0085G12, complete sequence.
GenBankAC1355690.0AC135569.6 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0018F17, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617950.11e-139putative squamosa promoter-binding-like protein 19
SwissprotQ2R3Y11e-140SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBLA0A0E0MFM51e-155A0A0E0MFM5_ORYPU; Uncharacterized protein
STRINGOPUNC11G11990.11e-156(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129612532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.19e-13SBP family protein