PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC11G12030.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 375aa MW: 42333.9 Da PI: 9.9741

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC11G12030.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00043	177	199	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C ++++++ +L Hi+ H OPUNC11G12030.1 177 SCSVCWRVYPTSRLLSIHISEaH 199 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	5.8	149	174	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	151	174	IPR007087	Zinc finger, C2H2
SMART	SM00355	7.4	176	199	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	178	199	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.29	214	239	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	216	239	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MINPTKSISL SLSLKIIITI IKIHQSFPLS NSKFRITRAR SSPLPSRSEP GFSAAAARDP 60 ITAAGEGRMQ QKPAAGAMEE EEVKGEAVGR RRPGLGFWLA ARRRLPPDDP FFAAGDMERE 120 LLAKQVALDL SEDERYQLER MEVASANALF CPISGCGAHL DCLENFEDHY STRHTASCSV 180 CWRVYPTSRL LSIHISEAHD SFFQAKVARG FPMYECLVEG CGVKLKSYKS RQQHLLDKHQ 240 FPKSFEFFKK ARPSQRQRNK NQKQRQTVHK GEETSETLMD VDVKKSSRHT NSRYRPKQHD 300 GKESKENEHS SCKEAKNNEM EVDKQVDELA SAVSRLSTAD STPSSISFGH RRSRGLAFVP 360 RSIRQNKQVS QTEPK

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MINPTKSISL SLSLKIIITI IKIHQSFPLS NSKFRITRAR SSPLPSRSEP GFSAAAARDP  60
ITAAGEGRMQ QKPAAGAMEE EEVKGEAVGR RRPGLGFWLA ARRRLPPDDP FFAAGDMERE  120
LLAKQVALDL SEDERYQLER MEVASANALF CPISGCGAHL DCLENFEDHY STRHTASCSV  180
CWRVYPTSRL LSIHISEAHD SFFQAKVARG FPMYECLVEG CGVKLKSYKS RQQHLLDKHQ  240
FPKSFEFFKK ARPSQRQRNK NQKQRQTVHK GEETSETLMD VDVKKSSRHT NSRYRPKQHD  300
GKESKENEHS SCKEAKNNEM EVDKQVDELA SAVSRLSTAD STPSSISFGH RRSRGLAFVP  360
RSIRQNKQVS QTEPK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060702	0.0	AK060702.1 Oryza sativa Japonica Group cDNA clone:001-030-G02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615475.1	0.0	zinc finger protein 511 isoform X2
TrEMBL	A0A0E0MFN0	0.0	A0A0E0MFN0_ORYPU; Uncharacterized protein
STRING	OPUNC11G12030.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10911	26	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	3e-90	zinc ion binding;nucleic acid binding;zinc ion binding