PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC11G12230.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 773aa MW: 81799 Da PI: 6.4496

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC11G12230.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	431.5	6.7e-132	405	772	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPil 91 lv+lLl+cA++vs+gd+ +a + L l+ asp gd+mqR+a+yf+ ALaarl+ +++ + ++ +++++ s e+l++++++++++P++ OPUNC11G12230.1 405 LVHLLLACADFVSKGDHPAALRHLHLLRRVASPLGDSMQRVASYFADALAARLSLLSPTSTSPRAAAAAAPYPfppSPETLKIYQILYQACPYI 498 68*************************************************99555555555555555555888************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185 kf+h+taNqaI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp+gpp+lR+Tgvg+ + +++etg+ La++A++l+vpfef++ va+r OPUNC11G12230.1 499 KFAHFTANQAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAARPGGPPTLRLTGVGH----PAAAVRETGRHLASLAASLRVPFEFHAAVADR 588 ******************************************************....88************************** PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 le l++ +L+ + gEalaVn v +lhr++ +s+ + +L+++++ Pk++++veqea hn++ Fl rfleal+yysa+fdsl+a++p+es OPUNC11G12230.1 589 LERLRPASLHRRVGEALAVNAVNRLHRVP------SSHLPPLLSMIRDQAPKIMTLVEQEAAHNGPYFLGRFLEALHYYSAIFDSLDATFPAES 676 ************************9......445566************************************************* PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 +r+kvE+ ll++ei+nvvacegaer++rhe+le+Wr+ +e GF++vpls a+ q + ll ++ +dgyr+ e+sg+l+lgW+dr+++++Sa OPUNC11G12230.1 677 AARMKVEQWLLAPEIRNVVACEGAERVARHERLERWRRLMEGRGFEAVPLSAAAVGQSQVLLGLYGaGDGYRLTEDSGCLLLGWQDRAIIAASA 770 ******************************************************************************************** PP GRAS 373 Wr 374 Wr OPUNC11G12230.1 771 WR 772 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.714	379	751	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-129	405	772	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence Send to blast
MGTTMLNCAD MAGDSAKLRQ QQTPTSPTAS VSESNIVAST ASADPEANDA LAGLQALRFD 60 GGGDIDDVEI QSPDIALWES IFADQIGVSG GADFLLSMSS AASPRRDFMA CSPKRDYMVT 120 SSPKRDYMLT SSPKRDYMVS SPKREYMVTS PRREMATSPR RTTFSNLYTA SHGGGGHHHQ 180 SYVHGGGMEG GGGHGAQLQY GGLAGYGKGK AQSPLHKVYI NNVGGGAHSS SSSHGGGGVK 240 SNTPSTLSCS SSYVHGGGND SELPSLPSMD PFLEEGYLGS YQLPEKAAGG GGGDINGGAS 300 ASVVTAPASS LPTLSECLAM PEPAYRGGDG GGDEAVVAAM AVAGELPVGA FVQPELYYGG 360 GGEFGGEGMA PPLQHQMATG SSLHSMLGSV IQSEPEQEQD SGLQLVHLLL ACADFVSKGD 420 HPAALRHLHL LRRVASPLGD SMQRVASYFA DALAARLSLL SPTSTSPRAA AAAAPYPFPP 480 SPETLKIYQI LYQACPYIKF AHFTANQAIF EAFHGEDRVH VVDLDILQGY QWPAFLQALA 540 ARPGGPPTLR LTGVGHPAAA VRETGRHLAS LAASLRVPFE FHAAVADRLE RLRPASLHRR 600 VGEALAVNAV NRLHRVPSSH LPPLLSMIRD QAPKIMTLVE QEAAHNGPYF LGRFLEALHY 660 YSAIFDSLDA TFPAESAARM KVEQWLLAPE IRNVVACEGA ERVARHERLE RWRRLMEGRG 720 FEAVPLSAAA VGQSQVLLGL YGAGDGYRLT EDSGCLLLGW QDRAIIAASA WRC

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence Send to blast

MGTTMLNCAD MAGDSAKLRQ QQTPTSPTAS VSESNIVAST ASADPEANDA LAGLQALRFD  60
GGGDIDDVEI QSPDIALWES IFADQIGVSG GADFLLSMSS AASPRRDFMA CSPKRDYMVT  120
SSPKRDYMLT SSPKRDYMVS SPKREYMVTS PRREMATSPR RTTFSNLYTA SHGGGGHHHQ  180
SYVHGGGMEG GGGHGAQLQY GGLAGYGKGK AQSPLHKVYI NNVGGGAHSS SSSHGGGGVK  240
SNTPSTLSCS SSYVHGGGND SELPSLPSMD PFLEEGYLGS YQLPEKAAGG GGGDINGGAS  300
ASVVTAPASS LPTLSECLAM PEPAYRGGDG GGDEAVVAAM AVAGELPVGA FVQPELYYGG  360
GGEFGGEGMA PPLQHQMATG SSLHSMLGSV IQSEPEQEQD SGLQLVHLLL ACADFVSKGD  420
HPAALRHLHL LRRVASPLGD SMQRVASYFA DALAARLSLL SPTSTSPRAA AAAAPYPFPP  480
SPETLKIYQI LYQACPYIKF AHFTANQAIF EAFHGEDRVH VVDLDILQGY QWPAFLQALA  540
ARPGGPPTLR LTGVGHPAAA VRETGRHLAS LAASLRVPFE FHAAVADRLE RLRPASLHRR  600
VGEALAVNAV NRLHRVPSSH LPPLLSMIRD QAPKIMTLVE QEAAHNGPYF LGRFLEALHY  660
YSAIFDSLDA TFPAESAARM KVEQWLLAPE IRNVVACEGA ERVARHERLE RWRRLMEGRG  720
FEAVPLSAAA VGQSQVLLGL YGAGDGYRLT EDSGCLLLGW QDRAIIAASA WRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-85	412	771	25	377	Protein SCARECROW
5b3h_D	2e-85	412	771	25	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012619	0.0	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616711.1	0.0	DELLA protein RHT-1
TrEMBL	A0A0E0MFQ1	0.0	A0A0E0MFQ1_ORYPU; Uncharacterized protein
STRING	OPUNC11G12230.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9221	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	3e-94	RGA-like 1