PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G12340.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 228aa    MW: 24942.1 Da    PI: 6.6694
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G12340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.22.3e-21181271107
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lp G+ F+Pt+ elvv+yL +++ +++l++ ++i+++di  ++Pwd+   ++++++  +fF++++++++ ++ ++ a+ +g+W+  g++ ++++
  OPUNC11G12340.1  18 LPTGCVFRPTEGELVVDYLYRRAIQEPLPC-DFITDADIQCHNPWDIV-PAEEKKNGKHFFTRKENSHPGDHGRSHAAGDGFWRLAGREVPIYN 109
                      699***************************.99**************5.456677899***********999999999**************** PP

              NAM  95 k.....kgelvglkktLv 107
                      k     +++lvg+k+tL 
  OPUNC11G12340.1 110 KssggaDEKLVGTKRTLK 127
                      9988888888******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-2415160IPR003441NAC domain
PROSITE profilePS5100522.96318160IPR003441NAC domain
PfamPF023653.5E-919129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAGPGVCINL LNGTTMHLPT GCVFRPTEGE LVVDYLYRRA IQEPLPCDFI TDADIQCHNP  60
WDIVPAEEKK NGKHFFTRKE NSHPGDHGRS HAAGDGFWRL AGREVPIYNK SSGGADEKLV  120
GTKRTLKNSG SPSDAQTLVP LVETMVEPDS SWMICRIYKK RQRAPHVIVP PFIGSARKAV  180
LAVPAIGNAG DAQVHFIDFP GHRCFEEGSD ESSDVITNDK DGDGHGKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1361504e-91AC136150.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0023F12, complete sequence.
GenBankAP0149674e-91AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697669.12e-90PREDICTED: NAC transcription factor NAM-B1-like
TrEMBLA0A0E0MFR21e-170A0A0E0MFR2_ORYPU; Uncharacterized protein
STRINGOPUNC11G12340.11e-171(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-19NAC domain containing protein 83