PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G12350.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 155aa    MW: 17641.5 Da    PI: 9.6817
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G12350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.73.2e-21241467128
              NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                       +Pt+ e+v +yL + + +  l+  ++i +v+i++v        ++++ek+ yfF++++ k + ++ +nr+t++g+W++ g++k+v+ +  +  
  OPUNC11G12350.1  24 LQPTEGEIVFHYLYRCAFNMLLPS-DFICDVNILRVPDIGV---LTEREKRKYFFMQKEIKCPGSRCRNRVTSKGFWRSAGSEKPVYYNqgG-- 111
                      68****************999999.99********975555...45678899***********9999********************98551.. PP

              NAM  99 l.....vglkktLvfykgrapkgektdWvmheyrl 128
                            vg+++tL+fy g+++++e+t+W   +++l
  OPUNC11G12350.1 112 GsdcmlVGIRRTLTFYYGNSRTAERTKWACMNFTL 146
                      234566**********************9888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-2217147IPR003441NAC domain
PROSITE profilePS5100523.32318155IPR003441NAC domain
PfamPF023651.9E-1124145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MASARLSTPS VNGATMHLPT MAMLQPTEGE IVFHYLYRCA FNMLLPSDFI CDVNILRVPD  60
IGVLTEREKR KYFFMQKEIK CPGSRCRNRV TSKGFWRSAG SEKPVYYNQG GGSDCMLVGI  120
RRTLTFYYGN SRTAERTKWA CMNFTLLATA FHLAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-151414611140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9401961e-119FJ940196.1 Oryza sativa Japonica Group clone KCS246C06 NAM protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615934.11e-44NAC transcription factor 25
TrEMBLA0A0E0MFR31e-114A0A0E0MFR3_ORYPU; Uncharacterized protein
STRINGOPUNC11G12350.11e-114(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-19NAC domain containing protein 83