PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G13190.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 522aa    MW: 59081.9 Da    PI: 11.1482
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G13190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.9e-1718117184
                      EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.......TTHHHHHHHHT--TT CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvlt.......kGWkeFvkangLkeg 77 
                      f+k+l+p+dv+ ++ lvlp     eh          ++++   + + ++d++g+++e+++i+ ++++r++l+       +GW++Fvka++L + 
  OPUNC11G13190.1  18 FEKQLSPADVTINA-LVLPAGA--EHvlppldiaayQYQT--ARLVDVKDLRGKRFEFRYIWGRRRRRHMLGdhgvndnEGWRGFVKAKRLATM 106
                      89*********998.8777663..4447777777556665..5589************************************************ PP

                      -EEEEE....E CS
               B3  78 DfvvFk....l 84 
                      D+vvF+     
  OPUNC11G13190.1 107 DTVVFMrrpaG 117
                      ******44431 PP
2B371.21.3e-22253355199
                      EEEE-..-HHHHT....T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlks....grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+l+ sdv+++    +++v+pk+ a+eh +  ++ + +l+++d++g +We+ +++  + + ++++l++GW+ F ka++L +gD+v+F+  +r
  OPUNC11G13190.1 253 FDKKLLESDVTANgggsALIVIPKSSAAEHeQVLPPIP-DLRVTDLHGGRWEFGHTWsdTDTERSHTLAAGWSAFIKAKRLFVGDTVIFM--RR 343
                      88999999999998887899**********74445566.9*****************86666666*************************..67 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                       ++el+v+v+r+
  OPUNC11G13190.1 344 PGGELLVGVRRN 355
                      9*********97 PP
3Auxin_resp462.3e-16380452782
       Auxin_resp   7 tksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                       + +F+ +Y+P+++t+eFvv++++ve + + +++++G+R+++ ++ +d+++r ++++  +v+d+    +++S W +L
  OPUNC11G13190.1 380 PRHPFRATYCPWQGTAEFVVRRDEVEGSPSlISLTPGTRVRLLMNPDDARRRMTQAVHGAVRDV----YSRSAWCML 452
                      5789*************************999******************99987777777774....458888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.0E-1912134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1113116IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-816111No hitNo description
PROSITE profilePS508638.65617135IPR003340B3 DNA binding domain
PfamPF023624.6E-1418118IPR003340B3 DNA binding domain
SMARTSM010190.03618135IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-19245356IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-16248356IPR015300DNA-binding pseudobarrel domain
CDDcd100176.42E-11252354No hitNo description
SMARTSM010190.0013253356IPR003340B3 DNA binding domain
PfamPF023627.3E-15255355IPR003340B3 DNA binding domain
PROSITE profilePS5086311.603257356IPR003340B3 DNA binding domain
PfamPF065075.5E-6381452IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MIPRRDVPAH GEPGFRFFEK QLSPADVTIN ALVLPAGAEH VLPPLDIAAY QYQTARLVDV  60
KDLRGKRFEF RYIWGRRRRR HMLGDHGVND NEGWRGFVKA KRLATMDTVV FMRRPAGGGG  120
GGGEGVLLVG VRRAPHVHYS RPGVERNKVV FEVCLAMQGV TAFEVTYYTR QGTFEFVVWR  180
DEYFGFYFSA FRGRRLIGIM RPPRSPTRYT DKLILGKSYV SHQRLLRLRV LRHAPPASRA  240
RSRRRGQREF CFFDKKLLES DVTANGGGSA LIVIPKSSAA EHEQVLPPIP DLRVTDLHGG  300
RWEFGHTWSD TDTERSHTLA AGWSAFIKAK RLFVGDTVIF MRRPGGELLV GVRRNTYGGM  360
PVGIPDKHVA GRRVLRDVGP RHPFRATYCP WQGTAEFVVR RDEVEGSPSL ISLTPGTRVR  420
LLMNPDDARR RMTQAVHGAV RDVYSRSAWC MLEVSILGKS NPFSSLLHYR VLMRRQQLHR  480
LCSPEMPPRL LHRCAASSDN GVLFFIVNPQ DGSQANNSAS HQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-13252454157368Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038351e-177AP003835.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1506_G02.
GenBankAP0038611e-177AP003861.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1046_F10.
GenBankAP0149631e-177AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882775.13e-85putative auxin response factor 20
SwissprotA3BH855e-89ARFT_ORYSJ; Putative auxin response factor 20
TrEMBLA0A0E0MG230.0A0A0E0MG23_ORYPU; Auxin response factor
STRINGOPUNC11G13190.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169621012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-22auxin response factor 17