PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G14540.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 248aa    MW: 27815.9 Da    PI: 6.0343
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G14540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.83.5e-14185220134
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C+nCg ++  Tp++R+gp+g+k+ CnaCGl+++  +
  OPUNC11G14540.1 185 CTNCGESSdaTPMMRHGPNGTKSFCNACGLMWANSR 220
                      ********************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132011.73191126IPR010399Tify domain
PfamPF062032.5E-7153184IPR010402CCT domain
SuperFamilySSF577169.98E-10178230No hitNo description
SMARTSM004011.5E-8179232IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.7E-13184224IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.01E-11184234No hitNo description
PfamPF003205.1E-12185219IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDNPTPSSNA GGGAAAANAS SGEHHKTSPV TAAAHFFDEE HPFDDILLPM DLFDFTDGLD  60
DGHGCYVEDQ AAIGQKTLSP AAEQQLSPAA EHGDEERLVM YYHGQEYVFD SVQPQKIENI  120
FQHLNGQEMI PQSIRPQPTN LVRPITVPEN FDRFAALTRY REKKRNIKFI KKADYSARKE  180
VALSCTNCGE SSDATPMMRH GPNGTKSFCN ACGLMWANSR KIRKIKNPTS EQQEDQQFNK  240
YWIYNQSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126191e-103CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616301.11e-132GATA transcription factor 19
TrEMBLA0A0E0MGI30.0A0A0E0MGI3_ORYPU; Uncharacterized protein
STRINGOPUNC11G14540.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158801213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-28ZIM-LIKE 2