PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G16030.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 186aa    MW: 21181.1 Da    PI: 12.1524
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G16030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.94.5e-101381583656
                      HCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  36 klgLterqVkvWFqNrRakek 56 
                       l L  rqV vWFqNrRa++k
  OPUNC11G16030.1 138 TLCLHPRQVAVWFQNRRARWK 158
                      5889****************9 PP
2HD-ZIP_I/II66.27.7e-221381853582
      HD-ZIP_I/II  35 eLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                      +L l+prqvavWFqnrRAR+ktkq+E+ ++aL++++d+++ e ++L++
  OPUNC11G16030.1 138 TLCLHPRQVAVWFQNRRARWKTKQIERHFAALRSRHDTIRLECDSLRR 185
                      589******************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.00679164IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.7E-9137163IPR009057Homeodomain-like
PfamPF000462.5E-7138158IPR001356Homeobox domain
SuperFamilySSF466892.5E-8138162IPR009057Homeodomain-like
CDDcd000862.14E-4139161No hitNo description
PROSITE profilePS500719.993139160IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MPTAVSASAA TRRRVFVAGG EEQQAKRETR AARQDAASPS IDAREGGGAA RQQGHTGIAP  60
FLLMRWAAAT RVAPLQCTRR RLKTMTTSSC TAAVAGSSER KAQITRDLHL HPRQNRRVRW  120
KTKQTERHFA TLCSHHDTLC LHPRQVAVWF QNRRARWKTK QIERHFAALR SRHDTIRLEC  180
DSLRRD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152160RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0799355e-50AC079935.3 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0095C06, from Chromosome 10, complete sequence.
GenBankAK2432945e-50AK243294.1 Oryza sativa Japonica Group cDNA, clone: J100053F20, full insert sequence.
GenBankAP0149665e-50AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankAY3463295e-50AY346329.1 Oryza sativa (indica cultivar-group) homeodomain leucine-zipper protein Hox8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0MH241e-131A0A0E0MH24_ORYPU; Uncharacterized protein
STRINGOPUNC11G16030.11e-132(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-17homeobox protein 16