PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G17200.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 259aa    MW: 28869.4 Da    PI: 5.3851
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G17200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-111842241055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +rRR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  OPUNC11G17200.1 184 KRRRERINERLRILQQLIPNG-----TKVDISTMLEEAVQYVKFLQ 224
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.116174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-13174233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-14176235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-11180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-12183228No hitNo description
PfamPF000102.0E-8184224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDARCANIWS AVNARSEESE MIDQLKSMFW GSSDAEINFY SPDGSVNSCI TTSTMPSSLF  60
LPLMDDEGFG TVPLMVSTGM DMCADDHQHQ VITGNKRMFP MDEHFEQQKK KPKKKTRTSR  120
SVSSSSTITD YETSSELVNP SCSSGSSVGE DSIAATEGSI VLKQSGNSRG HKQCSKDTQS  180
LYAKRRRERI NERLRILQQL IPNGTKVDIS TMLEEAVQYV KFLQLQIKLL SSDDTWMFAP  240
LAYNGMNMGL GHTFAENQE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1183461e-152AC118346.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0039F06, complete sequence.
GenBankAP0149671e-152AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126191e-152CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697725.11e-135PREDICTED: transcription factor bHLH139-like
TrEMBLA0A0E0MHG80.0A0A0E0MHG8_ORYPU; Uncharacterized protein
STRINGOPUNC11G17200.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.13e-33root hair defective 6-like 4