PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G19830.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 333aa    MW: 35976.9 Da    PI: 9.1744
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G19830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000574668123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  Cg++Fs+   L  H  +H
  OPUNC11G19830.1 46 FQCRTCGRRFSTFQALGGHRTSH 68
                     89**********99998888777 PP
2zf-C2H217.21.5e-05102124123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  Cgk+F +   L  H+r+H
  OPUNC11G19830.1 102 HRCDMCGKVFATGQALGGHMRRH 124
                      79********************9 PP
3zf-C2H211.80.00075241263123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C  Cg++F ++  L  H  +H
  OPUNC11G19830.1 241 YECRTCGRRFASHQALGGHRTSH 263
                      99************999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.1E-94570IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-84668No hitNo description
PROSITE profilePS5015710.8664673IPR007087Zinc finger, C2H2
SMARTSM003550.134668IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-897124No hitNo description
PfamPF139127.7E-12101125IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.5E-4102124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471102124IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
PfamPF139121.4E-8240265IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.762241268IPR007087Zinc finger, C2H2
SuperFamilySSF576675.59E-7241303No hitNo description
SMARTSM003550.097241263IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099281308IPR007087Zinc finger, C2H2
SMARTSM003551.1281303IPR015880Zinc finger, C2H2-like
PfamPF139126.1E-9281305IPR007087Zinc finger, C2H2
PROSITE patternPS000280283303IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEVATNTNNT TRSPVKLMLV LTLSPASKVI TKGGGGKRVH LDGGAFQCRT CGRRFSTFQA  60
LGGHRTSHKR PRVRADGLDL LLGARPGKVA GGGSGASTPV VHRCDMCGKV FATGQALGGH  120
MRRHRPLVGS GTVSTTWTTA TAATMSGSSS EERDDDDDCK CNLCVCFVVV AAAMDQEDYT  180
SLQLELEEEE DDDQLSQLAE LDVQLSLACG STAMSSSGDE DDAAPRLRKR RRRREATAAA  240
YECRTCGRRF ASHQALGGHR TSHLRPTTNK RRPGPSRPVI HACEVCGLGF QMGQALGGHM  300
RRHRPRNIDL GLKQIILQEI RPSSSLKLLD LFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227231RKRRR
2227233RKRRRRR
3227234RKRRRRRE
4228233KRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3058661e-179AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds.
GenBankCT8333221e-179CT833322.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616529.16e-73zinc finger protein ZAT8
TrEMBLA0A0E0MIC50.0A0A0E0MIC5_ORYPU; Uncharacterized protein
STRINGOPUNC11G19830.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-20C2H2 family protein