PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G00230.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 487aa    MW: 54264.5 Da    PI: 8.0795
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G00230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.35.8e-27404453353
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEE CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYe 53 
                      Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++  d+++ ei+Y+
  OPUNC12G00230.1 404 DGYSWRKYGQKQVKGSEFPRSYYKCTQPTCPVKRKVETTP-DGQIAEIVYN 453
                      9***************************************.*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540013.34E-3817228No hitNo description
PROSITE profilePS5060013.7825183IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1301.1E-587177No hitNo description
PfamPF029022.6E-493182IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:2.20.25.802.1E-22396453IPR003657WRKY domain
PROSITE profilePS5081119.37397440IPR003657WRKY domain
SuperFamilySSF1182901.23E-19399453IPR003657WRKY domain
SMARTSM007745.4E-24402461IPR003657WRKY domain
PfamPF031061.6E-19404453IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0019784Molecular FunctionNEDD8-specific protease activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MAMRPRHGGG GGEEEEERVL SHGDVVLLRC DLTILRGPHF LNDRIIAFYL AHLHHHDDDD  60
LLLLPPSIPY LLSNLPDPAS VAEPLRLASR RLLLLPVNDN PDVSHADGGS HWTLLVLDNS  120
VSGARFVHHD SLPPTNLPAA RRLAAVLRPL LPASPIPLIE GPTPRQTNGY DCGVFVLAVA  180
KAICHWWGWP PRECDRTHSD WLEAVKREVN ADSVKAMRTE LLQLIETLIQ DKKNNTNQYK  240
EGSYLTSASL PTTSRPNALQ LNFLVTLRLH LPVSACHSTQ DFGTWWDMES HKKVAAVKPV  300
ASRPSSRLRS FSMLQKDSTA TDSPWLTSLE EEIILRRPKA TRFTPSLSDS STEIAATRLE  360
DNGTYATYDR KKAATGQVAC WDNLTVSQSV RKPNVSAKNS LSYDGYSWRK YGQKQVKGSE  420
FPRSYYKCTQ PTCPVKRKVE TTPDGQIAEI VYNAFKGGCH CLDGFRNGNE ISDCQKSTGE  480
YVVDKKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2bkq_A6e-24191855176SENTRIN-SPECIFIC PROTEASE 8
2bkq_B6e-24191855176SENTRIN-SPECIFIC PROTEASE 8
2bkq_C6e-24191855176SENTRIN-SPECIFIC PROTEASE 8
2bkq_D6e-24191855176SENTRIN-SPECIFIC PROTEASE 8
2bkr_A6e-24191855176SENTRIN-SPECIFIC PROTEASE 8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698188.11e-180PREDICTED: uncharacterized protein LOC102718700
TrEMBLA0A0E0MIL20.0A0A0E0MIL2_ORYPU; Uncharacterized protein
STRINGOPUNC12G00230.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.15e-24WRKY family protein