PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G00380.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 279aa    MW: 29977.1 Da    PI: 6.7602
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G00380.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.25.8e-3155108255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtpeLH +Fv+av++LGG+++AtPk +l+lm+v gL++ hvkSHLQ+YR+
  OPUNC12G00380.2  55 PRLRWTPELHLSFVRAVDRLGGQDRATPKLVLQLMNVRGLSIGHVKSHLQMYRS 108
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.9251111IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2951109IPR009057Homeodomain-like
SuperFamilySSF466892.69E-1552109IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-2254110IPR006447Myb domain, plants
PfamPF002491.0E-856107IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGSAGKEEED GGGGAPAAAN NDGSSTSSTT VEEGDSGQRT SSSSSVRPYV RSKNPRLRWT  60
PELHLSFVRA VDRLGGQDRA TPKLVLQLMN VRGLSIGHVK SHLQMYRSKK IDESGQVIGG  120
ESWRSDDHLQ MRGGGHGGQA YNLGHLSLPA LHHRSITAGS GLAIHGPHGD VMDHTGSVQA  180
ITCLANTSHL PDFVQGSSSS PDDHIMNHQR PVLKEMICSE GSNHQEGPLN LDLSLDICPR  240
GEKRKREFSW RKQEEAHDHA IGGDQEAESC ATGLSLSLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1856110357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1856110357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1856110357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1856110357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411710.0AK241171.1 Oryza sativa Japonica Group cDNA, clone: J065117O05, full insert sequence.
GenBankGU0467890.0GU046789.1 Oryza sativa Japonica Group cultivar Dongjin-byeo myb-like DNA-binding domain-containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617115.11e-127probable transcription factor RL9 isoform X1
TrEMBLA0A0E0MIN60.0A0A0E0MIN6_ORYPU; Uncharacterized protein
STRINGOPUNC11G00360.21e-160(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-39G2-like family protein