PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G00950.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 363aa    MW: 39953.4 Da    PI: 5.6365
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G00950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.23e-22162223259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                      +Dgy+WrKYG K+++g++f+rsY+rCt++   gC+++k+++++ ++dp  +++tY+++H+++
  OPUNC12G00950.1 162 EDGYQWRKYGEKKIQGTHFTRSYFRCTYRddrGCQATKQIQQKdNNDPPNFQVTYSNDHTCN 223
                      8***************************99999*******8751679*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-23154223IPR003657WRKY domain
SuperFamilySSF1182904.18E-21155223IPR003657WRKY domain
SMARTSM007742.0E-31161224IPR003657WRKY domain
PfamPF031069.2E-24162222IPR003657WRKY domain
PROSITE profilePS5081116.972162220IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAAAAAAVAH NSSVCVGGLG EHEQADDAVA SVKEVAQVYE LIKTHQPLLL LHDNSQQLAY  60
TLLTEAMRAL NVALSVMKHL PSPASASASA SASSIPVMRM IKAEAATTPA PAADGGDNNH  120
VVGKAARRSS PAKRRRHITC CWINGEDKLS SSWSQLTAVP HEDGYQWRKY GEKKIQGTHF  180
TRSYFRCTYR DDRGCQATKQ IQQKDNNDPP NFQVTYSNDH TCNFVCTTTR LIYNTNNNPA  240
AALHSLTANP NGHPDDDSDD TIFTKMIKQE QQAAWLPSPP DLTTISNNFD ETPGLHVPQE  300
VPPPPSNSSV ISHYADEFDH HQMGQQLETT MMEEALGLGA DLDDPYFYDP NLLLIYENLM  360
NCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-13162222968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX8422440.0BX842244.3 Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0006G23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619940.10.0probable WRKY transcription factor 69 isoform X1
TrEMBLA0A0E0MIX40.0A0A0E0MIX4_ORYPU; Uncharacterized protein
STRINGOPUNC12G00950.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.27e-19WRKY family protein