PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G01380.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 342aa    MW: 38054 Da    PI: 9.1147
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G01380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.79.5e-53141451128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtd e++  yL +k  + +++    i evd++k+ePwdLp+k+k +ekewyfFs++d ky+tg r+nratk+gyWkatgkd+e+++
  OPUNC12G01380.1  14 LPPGFRFHPTDAEVILSYLLRKFLNPSFTS-LPIGEVDLNKCEPWDLPSKAKMGEKEWYFFSHKDMKYPTGMRTNRATKEGYWKATGKDREIFK 106
                      79*************************888.56***************99999****************************************9 PP

              NAM  95 k.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +++lvg+kktLvfy grapkg+kt+Wvmhe+rl
  OPUNC12G01380.1 107 PticknNKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRL 145
                      9999988899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-6010172IPR003441NAC domain
PROSITE profilePS5100556.00214172IPR003441NAC domain
PfamPF023654.1E-2615145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVELVKSELG GLFLPPGFRF HPTDAEVILS YLLRKFLNPS FTSLPIGEVD LNKCEPWDLP  60
SKAKMGEKEW YFFSHKDMKY PTGMRTNRAT KEGYWKATGK DREIFKPTIC KNNKQLVGMK  120
KTLVFYMGRA PKGTKTNWVM HEFRLHANLH NDHPNLRLNP KDEWVVCKVF HKKQGDEAIN  180
KQQQQAAVDQ YSAGTPNSSS SVVQAGDDFF QLDDIIDPSI YFSNSSAANI LSAPPNMSNN  240
DAVPYNYGAS TTTTSTTTSA GSFQQQPNYY SLINKSSSSS NVSSWNNMPP PPVAGGVHGI  300
GSSYSLQHQA AMVKALGDVI RAPNPLGVPQ YKLEDPYLWG SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-52917315169NAC domain-containing protein 19
3swm_B3e-52917315169NAC domain-containing protein 19
3swm_C3e-52917315169NAC domain-containing protein 19
3swm_D3e-52917315169NAC domain-containing protein 19
3swp_A3e-52917315169NAC domain-containing protein 19
3swp_B3e-52917315169NAC domain-containing protein 19
3swp_C3e-52917315169NAC domain-containing protein 19
3swp_D3e-52917315169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in responses to drought stress and salt stress. Transactivates the stress response genes LEA19 and PM19L. {ECO:0000269|PubMed:19135985}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:19135985). Induced by drought stress (PubMed:19135985). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:19135985}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8295090.0CT829509.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103O19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615868.11e-180NAC domain-containing protein 45
SwissprotQ2RB330.0NAC45_ORYSJ; NAC domain-containing protein 45
TrEMBLA0A0E0MJ290.0A0A0E0MJ29_ORYPU; Uncharacterized protein
STRINGOPUNC12G01380.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.26e-77Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zheng X,Chen B,Lu G,Han B
    Overexpression of a NAC transcription factor enhances rice drought and salt tolerance.
    Biochem. Biophys. Res. Commun., 2009. 379(4): p. 985-9
    [PMID:19135985]