PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G02190.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 556aa    MW: 61409.6 Da    PI: 5.4393
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G02190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS323.83.4e-991655441373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l+elLl+cA+avssg+ + a +lL++++ ++sp+gd++qRla+yf+ +L+arla+ v +l + l + +++  +  e l a+++f  ++ +  ++
  OPUNC12G02190.1 165 LRELLLSCAQAVSSGNRRSAGELLEQIKRHSSPTGDATQRLAHYFADGLEARLAG-VASLEHRLFAAAER-ASAMELLEAYQVFMAACCFKWVA 256
                      689****************************************************.77777766544444.569999***************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                      +  aN +Il+a+eg +++Hi+D++ + +GlQWp+Llq La+R++gpp++R+T vg+p++g   +++le+tg+rL++ A+++g+pf+f++++a r
  OPUNC12G02190.1 257 FTFANMTILRAAEGRSKLHIVDYGGQyHGLQWPSLLQWLAEREGGPPEVRMTLVGHPQPGfrPARRLERTGRRLSNCARAFGLPFKFRAVAAAR 350
                      ***********************86538*************************************************************9999* PP

             GRAS 186 ledleleeL..rvkp.gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                      +e+++ e+    v+p +Ea++Vn vl+l +l+des+  ++  +rd vL  +++++P v+v +  +  h+++ F +rf eal ++salfd+l+a+
  OPUNC12G02190.1 351 WETVTAEDVagGVDPdDEAIVVNDVLNLGTLMDESGVFDDpsPRDMVLGNIRDMRPAVFVQAVVNGAHGAPFFPTRFREALFFFSALFDMLDAT 444
                      *********6668889*******************98877779************************************************999 PP

             GRAS 275 lpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                       p+e  + r+++Er +l+r++v v+a egaer+er et+++W++r ++aG+++v+++ ++++ +++ +r+ + +++ +ee+ g+l++gWk+r L
  OPUNC12G02190.1 445 TPKEMsHLRMVLERDVLRRAAVGVIAGEGAERVERPETYRRWQARNRRAGLRQVAVEADVVEAVRRRVRRRHHEEFVIEEDAGWLLQGWKGRIL 538
                      99887699****************************************************************999******************* PP

             GRAS 368 vsvSaW 373
                      ++ SaW
  OPUNC12G02190.1 539 YAHSAW 544
                      ****** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.636139525IPR005202Transcription factor GRAS
PfamPF035141.2E-96165544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MGPAAPPSEA ATTADDLVLP YISRILMEED IDDDMFFCLY PDHPALLEAQ QPFSQILSSS  60
GIAGELNMED SAALMQGSGS GSGRKSSGHC GDELEAEVGR ASKMIVMPED DDGDDGVGEM  120
LDRMMLNGDE AFHGELNAPR VPAEKKGAKA VRRRRRQAKG EVVDLRELLL SCAQAVSSGN  180
RRSAGELLEQ IKRHSSPTGD ATQRLAHYFA DGLEARLAGV ASLEHRLFAA AERASAMELL  240
EAYQVFMAAC CFKWVAFTFA NMTILRAAEG RSKLHIVDYG GQYHGLQWPS LLQWLAEREG  300
GPPEVRMTLV GHPQPGFRPA RRLERTGRRL SNCARAFGLP FKFRAVAAAR WETVTAEDVA  360
GGVDPDDEAI VVNDVLNLGT LMDESGVFDD PSPRDMVLGN IRDMRPAVFV QAVVNGAHGA  420
PFFPTRFREA LFFFSALFDM LDATTPKEMS HLRMVLERDV LRRAAVGVIA GEGAERVERP  480
ETYRRWQARN RRAGLRQVAV EADVVEAVRR RVRRRHHEEF VIEEDAGWLL QGWKGRILYA  540
HSAWVVAEAE AEDGAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3517254526379Protein SCARECROW
5b3h_A1e-3517254525378Protein SCARECROW
5b3h_D1e-3517254525378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619736.10.0scarecrow-like protein 30
TrEMBLA0A0E0MJF00.0A0A0E0MJF0_ORYPU; Uncharacterized protein
STRINGOPUNC12G02190.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160181014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.18e-93SCARECROW-like 14