PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G04190.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 261aa    MW: 27508.7 Da    PI: 8.9356
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G04190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16.1e-20169218255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae+Aa+a++ a+++++g
  OPUNC12G04190.1 169 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEDAARAYDGAALRFRG 218
                      8********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.64E-30168228No hitNo description
SuperFamilySSF541711.18E-22169227IPR016177DNA-binding domain
PfamPF008472.5E-13169218IPR001471AP2/ERF domain
SMARTSM003801.1E-36169232IPR001471AP2/ERF domain
PROSITE profilePS5103225.462169226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-33169227IPR001471AP2/ERF domain
PRINTSPR003673.1E-12170181IPR001471AP2/ERF domain
PRINTSPR003673.1E-12192208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MCCISDEVAN RGEQQRQRRR PLDAGGDEGA VAASTSMSPA AASLLAAPML SRRRQAEEMM  60
AMVSALARVV ASGGGAVSSS LPAKRPAERE PEDGAAVENA WWSYCSELAA AGTPSPAAAP  120
FPAGYVPSPG QHSPASAFTA AAADEEQLPS PSSADSGGGG ESAGTARKRY RGVRQRPWGK  180
WAAEIRDPHK AARVWLGTFD TAEDAARAYD GAALRFRGSR AKLNFPEHAT LPPPPTPAAH  240
RWGYFCQVRS TVNLKLTWHA T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-24168226463ATERF1
3gcc_A1e-24168226463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171ARKRYRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071251e-170AK107125.1 Oryza sativa Japonica Group cDNA clone:002-124-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619856.11e-104ethylene-responsive transcription factor ERF110
TrEMBLA0A0E0MK410.0A0A0E0MK41_ORYPU; Uncharacterized protein
STRINGOPUNC12G04190.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-25related to AP2 6