PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G05650.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25319.3 Da    PI: 9.2113
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G05650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.98.2e-261058250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     rien   rqvtf+kRr g+lKKA ELSvLCda+v viifss+gkl+e +
  OPUNC12G05650.1 10 RIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELA 58
                     8*********************************************965 PP
2K-box471.1e-1610319211100
            K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      + + +  +q +  L++ei  Lqr +R   G + ++++l  L+ Le+ Le  + +iR++K++++ ++i+ l++ke  l+ +n++L++k++e
  OPUNC12G05650.1 103 ALQRQVAEQGILLLREEIGLLQRGLRSTYGGGAGDMTLDKLHALEKGLELWIYQIRTTKMHMMQQEIQFLRNKEGILKAANEMLQEKVKE 192
                      4556777899999**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.57E-25164IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.464161IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-27323IPR002100Transcription factor, MADS-box
CDDcd002658.11E-35393No hitNo description
PfamPF003197.5E-241056IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-273859IPR002100Transcription factor, MADS-box
PfamPF014867.8E-18105190IPR002487Transcription factor, K-box
PROSITE profilePS5129711.031106196IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVRGKVQMRR IENPVHRQVT FCKRRGGLLK KARELSVLCD ADVGVIIFSS QGKLHELATN  60
GITVICEYNS EILSFCSRNA RDMHNLVERY QSNVTGGQME REALQRQVAE QGILLLREEI  120
GLLQRGLRST YGGGAGDMTL DKLHALEKGL ELWIYQIRTT KMHMMQQEIQ FLRNKEGILK  180
AANEMLQEKV KEQQKLYTSL LDLHSQQPTQ SMTYGNCFFS I
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1777001e-171AY177700.1 Oryza sativa (japonica cultivar-group) transcription factor MADS33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878023.11e-145MADS-box transcription factor 33 isoform X2
SwissprotQ2QW551e-130MAD33_ORYSJ; MADS-box transcription factor 33
TrEMBLA0A0E0MKM71e-162A0A0E0MKM7_ORYPU; Uncharacterized protein
STRINGOPUNC12G05650.11e-163(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-48AGAMOUS-like 12