PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G05700.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 186aa    MW: 19291.7 Da    PI: 7.4284
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G05700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1001.7e-3170124358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                       +rY+eClkNhAa++Gg a+DGCgEfmp  geeg+ +al+C+ACgCHRnFHR+e +
  OPUNC12G05700.1  70 VARYRECLKNHAAAIGGSATDGCGEFMPG-GEEGSLDALRCSACGCHRNFHRKELD 124
                      579*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.1E-2871123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2272124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.4E-3072122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.52473122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDLSGAQGEL PLPMHAAASP YLGLHHDHHH HHGGGGGGGM NGRHMSPPTP PAAAEESKAV  60
VVVPSSSAAV ARYRECLKNH AAAIGGSATD GCGEFMPGGE EGSLDALRCS ACGCHRNFHR  120
KELDAAEPTA ARPHHLLHHH AMSPLAAHRG HHHHHLLVAA LPPPTRMVMP LSATAHGGRE  180
ACGKEG
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9548530.0AL954853.5 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443023.15e-56zinc-finger homeodomain protein 3
RefseqXP_021321592.15e-56zinc-finger homeodomain protein 3
SwissprotQ2QW442e-52ZHD3_ORYSJ; Zinc-finger homeodomain protein 3
TrEMBLA0A0E0MKN31e-126A0A0E0MKN3_ORYPU; Uncharacterized protein
STRINGOPUNC12G05700.11e-127(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.11e-27homeobox protein 33