PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC12G06330.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 426aa MW: 45014.4 Da PI: 6.3197

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC12G06330.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.1	1e-24	341	391	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k+++l d++ yF+lpi++AA++L+vc+T+LK iCR++G+ RWP+Rk++s+ OPUNC12G06330.1 341 TKQLQLGDIAPYFELPIAKAARKLDVCATALKGICRKHGVLRWPYRKVRSI 391 89**********************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.7	331	413	IPR003035	RWP-RK domain
Pfam	PF02042	2.1E-20	344	391	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MADDGGSGAD GGGEHFELDF PSPLLDNFDV LELLDLSNVL GDDDVAPPAP VQMSVDGGGG 60 KLLPGSSGDD LVDWSAVFGN CSKIDGEYAP PPIQELPPPV VHGGASVSTS TTSSAAPAPA 120 PPQEVTVDCS GCQVLREVVH SNGLETTKLC IHGGVAGGEF YHAILDVHRV NASVPAPTLA 180 HHSIINFRGR DYEWVKQYLT EYALRRAGGG FAVVQDSLSA FHDALCTTMA PCSSHVDDDA 240 HKRASSAAAK SNGNGDHQLV VHNAAVLPIP ESSRCLVAAD QAAATNNNGS GDRRLIVDTT 300 AATAIQPPAS GPSQASHTSH HVQQRFHLAA RSALAIQRER TKQLQLGDIA PYFELPIAKA 360 ARKLDVCATA LKGICRKHGV LRWPYRKVRS IDRQIATLRR TGNGDATRDE IETLIASRRR 420 IVAGLE

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MADDGGSGAD GGGEHFELDF PSPLLDNFDV LELLDLSNVL GDDDVAPPAP VQMSVDGGGG  60
KLLPGSSGDD LVDWSAVFGN CSKIDGEYAP PPIQELPPPV VHGGASVSTS TTSSAAPAPA  120
PPQEVTVDCS GCQVLREVVH SNGLETTKLC IHGGVAGGEF YHAILDVHRV NASVPAPTLA  180
HHSIINFRGR DYEWVKQYLT EYALRRAGGG FAVVQDSLSA FHDALCTTMA PCSSHVDDDA  240
HKRASSAAAK SNGNGDHQLV VHNAAVLPIP ESSRCLVAAD QAAATNNNGS GDRRLIVDTT  300
AATAIQPPAS GPSQASHTSH HVQQRFHLAA RSALAIQRER TKQLQLGDIA PYFELPIAKA  360
ARKLDVCATA LKGICRKHGV LRWPYRKVRS IDRQIATLRR TGNGDATRDE IETLIASRRR  420
IVAGLE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL831806	1e-106	AL831806.5 Oryza sativa chromosome 12, . BAC OSJNBb0106P21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AL954160	1e-106	AL954160.5 Oryza sativa chromosome 12, . BAC OSJNBb0078J08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	1e-106	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006664445.1	1e-139	PREDICTED: uncharacterized protein LOC102713973
TrEMBL	A0A0E0MKV9	0.0	A0A0E0MKV9_ORYPU; Uncharacterized protein
STRING	OPUNC12G06330.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-12	RWP-RK domain-containing protein