PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G07750.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 545aa    MW: 58971.1 Da    PI: 6.6652
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G07750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.9e-09105130126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C ++ ++G C++G +CkF+H+
  OPUNC12G07750.1 105 PGEPDCTYYVKFGSCRFGMKCKFNHP 130
                      5789*********************8 PP
2zf-CCCH25.81.8e-08239261325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      +e+C++++  G Ck+G  Ck+ H
  OPUNC12G07750.1 239 QEECKYYSTPGGCKFGKACKYLH 261
                      699******************** PP
3zf-CCCH34.53.4e-11286310226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++++rtG Cky  +CkF+H+
  OPUNC12G07750.1 286 GEKECPYYMRTGSCKYATNCKFHHP 310
                      7899********************9 PP
4zf-CCCH19.81.4e-06432458127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++f ++G+Ck+  +Ck++H++
  OPUNC12G07750.1 432 PGQPECQHFVKSGFCKFRMKCKYHHPR 458
                      5789*********************96 PP
5zf-CCCH23.31.1e-07495520227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C ++ r+G Ck+G+ C ++H++
  OPUNC12G07750.1 495 DQPVCTYYGRYGVCKFGPACAYNHPF 520
                      5799********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.258104132IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013104131IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-6106130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103236264IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-4237263IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-6239261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4242262IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5284311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793284312IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-8286310IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6287311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4290309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.676431459IPR000571Zinc finger, CCCH-type
SMARTSM003560.028431458IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.122493521IPR000571Zinc finger, CCCH-type
SMARTSM003560.0066494520IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5495520IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-5496521IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MADADARAPP KSEPGATPIG SISPSSTAAA AGEDEVEVEE QLAGLAIADQ GDDLLLPKPT  60
GWEDGPVVVA GDEVSGGEKL PGEVAAVVGV EGAAADSRPR FPRRPGEPDC TYYVKFGSCR  120
FGMKCKFNHP ARKKKSRVKG SNGGSGSGGS NSSSNKASSP DDEQQAPKEE YGSYVPDISP  180
EVDSLGFADK GSTSNLENFK NSSYEIIDVK KGRVEPKELK ALKVAKERRK EFISEGSSQE  240
ECKYYSTPGG CKFGKACKYL HRDGKEGKTE AEKVDLNFLG LPLRPGEKEC PYYMRTGSCK  300
YATNCKFHHP DPSNVASKDP LLEHENGDTP QQDVQGSSSQ PNASIWPDQR TVNEHHVPFI  360
APSPSYSAGM LPPQGMYPPP EWNGYHQVPL NPYYPPGVPF QHFPAPINHP MYKAPEIPGH  420
QQVPSEEYPE RPGQPECQHF VKSGFCKFRM KCKYHHPRSP VPPAGALSPL GLPIKPVSSF  480
ILALLGLFDT ASTQDQPVCT YYGRYGVCKF GPACAYNHPF NFSPVPAAGP PLLPAQYPTP  540
GNYTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119620.0AK111962.1 Oryza sativa Japonica Group cDNA clone:001-032-B06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620300.10.0zinc finger CCCH domain-containing protein 65 isoform X1
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A0E0MLC10.0A0A0E0MLC1_ORYPU; Uncharacterized protein
STRINGOPUNC12G07750.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.13e-55C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]