PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G08520.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 454aa    MW: 48484.3 Da    PI: 8.1368
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G08520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.8e-116993327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     ++ C++++rtG C++G +CkF+H+p
  OPUNC12G08520.1 69 EPDCSYYMRTGLCRFGMTCKFNHPP 93
                     789********************97 PP
2zf-CCCH38.81.6e-12114138327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  OPUNC12G08520.1 114 QPECQYYLKTGTCKFGATCKFHHPR 138
                      799********************96 PP
3zf-CCCH314.3e-10160184327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+ ++CkF+H++
  OPUNC12G08520.1 160 EKECAYYLRTGQCKFASTCKFHHPQ 184
                      679********************97 PP
4zf-CCCH39.59.4e-13320345227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  OPUNC12G08520.1 320 DQPECQFYMKTGDCKFGAVCKFHHPK 345
                      689*********************96 PP
5zf-CCCH37.54e-12365391127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C f++r+G+Ck+G++CkF H++
  OPUNC12G08520.1 365 PGEPVCTFYSRYGICKFGPNCKFDHPM 391
                      5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-56693IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2816694IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-86993IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-57194IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-47292IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6111138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244111139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6113140IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10114138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-5117139IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4157184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286157185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6158185IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-7160184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511318346IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5318345IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9320345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5321348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-5324346IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7364391IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99364392IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9366391IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6368393IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4369389IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MAAGAGAGGG GGEGGGNGGG TSPGGVSAAT AAIGPHHLGV AAAEEAMWQM TLGGGESMES  60
SPYPERIGEP DCSYYMRTGL CRFGMTCKFN HPPNRKLAVA AARMNGEYPY RIGQPECQYY  120
LKTGTCKFGA TCKFHHPREK AALATHVQLN VLGYPLRPSE KECAYYLRTG QCKFASTCKF  180
HHPQPSNTMV AVRSSMYSPG QSATSPGQHT YPGAVTNWTL SRSASFIASP RWPGHSGYAQ  240
VIVPQGLVQV PGWNPYAAQM GSSSPDDQQR TPVTTQYYGS RQSETGGMGD HGMYQSYQGG  300
SVPVSVYTVQ GENIFPERPD QPECQFYMKT GDCKFGAVCK FHHPKERLVP APNCALNSLG  360
LPLRPGEPVC TFYSRYGICK FGPNCKFDHP MGTLMYGTAT SPTGDVSSMH YQLSPSPGHS  420
GILLDGGSGR SHRVPQSDSQ QIPSGDGNTE REAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115110.0AK111511.1 Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620174.10.0zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0E0MLM20.0A0A0E0MLM2_ORYPU; Uncharacterized protein
STRINGOPUNC12G08520.30.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-153zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]