PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G08520.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 442aa    MW: 47133.6 Da    PI: 8.0309
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G08520.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.6e-116993327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     ++ C++++rtG C++G +CkF+H+p
  OPUNC12G08520.2 69 EPDCSYYMRTGLCRFGMTCKFNHPP 93
                     789********************97 PP
2zf-CCCH38.81.5e-12114138327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  OPUNC12G08520.2 114 QPECQYYLKTGTCKFGATCKFHHPR 138
                      799********************96 PP
3zf-CCCH30.56.4e-10149172427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      ++C +++rtG+Ck+ ++CkF+H++
  OPUNC12G08520.2 149 KECAYYLRTGQCKFASTCKFHHPQ 172
                      68********************97 PP
4zf-CCCH39.59.1e-13308333227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  OPUNC12G08520.2 308 DQPECQFYMKTGDCKFGAVCKFHHPK 333
                      689*********************96 PP
5zf-CCCH37.53.9e-12353379127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C f++r+G+Ck+G++CkF H++
  OPUNC12G08520.2 353 PGEPVCTFYSRYGICKFGPNCKFDHPM 379
                      5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-56693IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2816694IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-86993IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-57194IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-47292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244111139IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6111138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6113140IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-10114138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5117139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.718145173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5146173IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4147172IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-7149172IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5306333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511306334IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9308333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5309336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-5312334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99352380IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7352379IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9354379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6356381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4357377IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MAAGAGAGGG GGEGGGNGGG TSPGGVSAAT AAIGPHHLGV AAAEEAMWQM TLGGGESMES  60
SPYPERIGEP DCSYYMRTGL CRFGMTCKFN HPPNRKLAVA AARMNGEYPY RIGQPECQYY  120
LKTGTCKFGA TCKFHHPREK AALATHSEKE CAYYLRTGQC KFASTCKFHH PQPSNTMVAV  180
RSSMYSPGQS ATSPGQHTYP GAVTNWTLSR SASFIASPRW PGHSGYAQVI VPQGLVQVPG  240
WNPYAAQMGS SSPDDQQRTP VTTQYYGSRQ SETGGMGDHG MYQSYQGGSV PVSVYTVQGE  300
NIFPERPDQP ECQFYMKTGD CKFGAVCKFH HPKERLVPAP NCALNSLGLP LRPGEPVCTF  360
YSRYGICKFG PNCKFDHPMG TLMYGTATSP TGDVSSMHYQ LSPSPGHSGI LLDGGSGRSH  420
RVPQSDSQQI PSGDGNTERE AS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115110.0AK111511.1 Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620174.10.0zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0E0MLM30.0A0A0E0MLM3_ORYPU; Uncharacterized protein
STRINGOPUNC12G08520.30.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-143zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]