PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G08600.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20023.1 Da    PI: 10.6321
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G08600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.94.9e-221966249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ri+nk +rqvtf+kRr g++KKA+EL  L++a vav++fs+ ++ y +
  OPUNC12G08600.1 19 RIDNKERRQVTFTKRRGGLFKKASELALLTGASVAVVVFSEANHTYAF 66
                     8******************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.021070IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-251083IPR002100Transcription factor, MADS-box
SMARTSM004329.8E-291069IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-181232IPR002100Transcription factor, MADS-box
PfamPF003191.2E-221966IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-183247IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-184768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAHLLGRTSM GRQRIEIRRI DNKERRQVTF TKRRGGLFKK ASELALLTGA SVAVVVFSEA  60
NHTYAFGHLS VDAVLRSYAP VPGEAAAAAP VPVHGEDVDL HWLRIAADEI GAQVAAEQAR  120
MRGVAAQIVQ AKAGRRFWWE ADVDALGEAQ LPEFVKALKK LRDNVGRHVN ALLAPQPPPL  180
LLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-151091184Myocyte-specific enhancer factor 2B
1tqe_Q1e-151091184Myocyte-specific enhancer factor 2B
1tqe_R1e-151091184Myocyte-specific enhancer factor 2B
1tqe_S1e-151091184Myocyte-specific enhancer factor 2B
6c9l_A1e-151091184Myocyte-specific enhancer factor 2B
6c9l_B1e-151091184Myocyte-specific enhancer factor 2B
6c9l_C1e-151091184Myocyte-specific enhancer factor 2B
6c9l_D1e-151091184Myocyte-specific enhancer factor 2B
6c9l_E1e-151091184Myocyte-specific enhancer factor 2B
6c9l_F1e-151091184Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139420.0AL713942.4 Oryza sativa chromosome 12, . BAC OSJNBa0009F05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619582.12e-97agamous-like MADS-box protein AGL61
TrEMBLA0A0E0MLN41e-128A0A0E0MLN4_ORYPU; Uncharacterized protein
STRINGOPUNC12G08600.11e-129(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-27AGAMOUS-like 61