PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G08610.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 186aa    MW: 19975.5 Da    PI: 11.2108
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G08610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.26.5e-161965349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     i+ + +r vtf+kRr g++KK  EL  L +a +av++fs+t++ y +
  OPUNC12G08610.1 19 IDTNDRRRVTFAKRRCGLFKKVAELALLIGASIAVVVFSETNRAYAF 65
                     778899************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.39969IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-19968IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.05E-191083IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-141131IPR002100Transcription factor, MADS-box
PfamPF003191.6E-171965IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-143146IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-144667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MRPPGRTSKG RHHIEIRLID TNDRRRVTFA KRRCGLFKKV AELALLIGAS IAVVVFSETN  60
RAYAFGDPSV DAVVLSYAPV PGEAAAAAPV HRGDGLGEDV DLEELRRAVE ETSAEVAASR  120
RRSCRRRPRG GSGGRSTWTR SGRLCSQSSP ERSRSSGTTS TATPAAVEAA AVGDSRSHAL  180
FLQLHL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877889.12e-53LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL62
TrEMBLA0A0E0MLN51e-129A0A0E0MLN5_ORYPU; Uncharacterized protein
STRINGOPUNC12G08610.11e-129(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.12e-17M-type_MADS family protein