PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G11490.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 195aa    MW: 21075.6 Da    PI: 11.6144
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G11490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.5e-0767111755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ r RR+ri ++ +eL +l+P a    ++ +s ae+L+ A ++++ Lq
  OPUNC12G11490.1  67 AAARERRRRISNKTAELSRLIPGA----ARMNSTAEMLQAAARHVRLLQ 111
                      567899999**************8....577***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.96960110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-962122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-863126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-566116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-567111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSSATTRLGV RRPTPAPQQQ QQRWELPDAA FVRGAGAADT KKGGAASNHD GDDGRHHHHH  60
NQAVQSAAAR ERRRRISNKT AELSRLIPGA ARMNSTAEML QAAARHVRLL QAQVGMLALM  120
HSSAEARAPS MAASQEHHQM RALLASGGVQ ERLAGEGRCL VPTRLVHAIA DDDAMANSNP  180
ALSRDVNRFK NSLEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8318081e-142AL831808.4 Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-142AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX2558751e-142BX255875.3 Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664569.12e-48PREDICTED: transcription factor bHLH52-like
TrEMBLA0A0E0MMM81e-137A0A0E0MMM8_ORYPU; Uncharacterized protein
STRINGOPUNC12G11490.11e-138(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.12e-22bHLH family protein