PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G11630.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 25883.4 Da    PI: 7.0465
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G11630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.53.2e-271059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rien+  rqvtfskRr g++KKA+E+ vLCd++va+i+fs +gkly+y+s
  OPUNC12G11630.1 10 RIENEVSRQVTFSKRRSGLFKKAHEIAVLCDVDVALIVFSGKGKLYDYAS 59
                     8***********************************************86 PP
2K-box67.44.9e-23921691693
            K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                      s++ ++ kL+ +ie L+++qR+l+G++L+sL l+++qqLe+q+++slk+iRs+K++ll+e+   l kk  e++  +++
  OPUNC12G11630.1  92 SMSYDHIKLRGRIEALKKSQRNLMGQELDSLALRDIQQLENQIDTSLKNIRSRKEKLLMEKNTILEKKITEVETLHTS 169
                      7888999***************************************************************99988865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.034161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-30278IPR002100Transcription factor, MADS-box
CDDcd002654.28E-40271No hitNo description
PRINTSPR004041.0E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.55890176IPR002487Transcription factor, K-box
PfamPF014861.0E-1692164IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGRGKVQLRR IENEVSRQVT FSKRRSGLFK KAHEIAVLCD VDVALIVFSG KGKLYDYASS  60
HTSMERILEK YDRHVLSQGN NVTEEFPELE GSMSYDHIKL RGRIEALKKS QRNLMGQELD  120
SLALRDIQQL ENQIDTSLKN IRSRKEKLLM EKNTILEKKI TEVETLHTSI GASPTEAAAA  180
PPVCNADDAF VPNLNICYGD SDEPGTMTAP LGWTSSNNGL PWWMLQSSSN G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-21174172MEF2C
5f28_B5e-21174172MEF2C
5f28_C5e-21174172MEF2C
5f28_D5e-21174172MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2500750.0AY250075.1 Oryza sativa (japonica cultivar-group) MADS20 (MADS20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619865.21e-148MADS-box transcription factor 20
SwissprotQ2QQA31e-149MAD20_ORYSJ; MADS-box transcription factor 20
TrEMBLA0A0E0MMP41e-172A0A0E0MMP4_ORYPU; Uncharacterized protein
STRINGOPUNC12G11630.11e-173(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146432121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-61AGAMOUS-like 8