PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G11920.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 518aa    MW: 55092 Da    PI: 7.6739
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G11920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.51e-31248304259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  OPUNC12G11920.1 248 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 304
                      8**************************************99.***************8 PP
2WRKY1079.1e-34404462159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  OPUNC12G11920.1 404 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYAGCNVRKHIERASSDPKAVITTYEGKHNHE 462
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-28244306IPR003657WRKY domain
SuperFamilySSF1182902.62E-25246306IPR003657WRKY domain
SMARTSM007742.5E-34247305IPR003657WRKY domain
PROSITE profilePS5081123.192248306IPR003657WRKY domain
PfamPF031061.6E-24248304IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-36390464IPR003657WRKY domain
SuperFamilySSF1182902.48E-29396464IPR003657WRKY domain
PROSITE profilePS5081137.413399464IPR003657WRKY domain
SMARTSM007741.1E-39404463IPR003657WRKY domain
PfamPF031064.0E-26405462IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MSARPPPPPR PRLALPPRSA AESLFTGAGD ASPGPLTLAS ALFPSDPADG VGSVMTSSSA  60
AAGATSFTQL LIGNLAAPPP PPPQPPQQQQ REAARGGGVA RAGPALSVAP PRAAAGAAAG  120
SVFTVPPGLS PSGLLDSPGL LFSPAMLDIY FVKTNPEGGF GMSHREALAQ VTAQASHSPL  180
RMFDHTEQPS FSAAPTSSEA MQHMSAAVNM TGISDMVTGP TNNENVAFQP AEASQRYQVN  240
APVDKPADDG YNWRKYGQKV VKGSDCPRSY YKCTHPNCPV KKKVEHAEDG QISEIIYKGK  300
HNHQRPPNKR AKDGSSSAAD QNEQSNDTSS GLSGIKRDQE AIYGISEQLS GLSDGDDMDD  360
GESRPHEADN KESDSKKRNI QISSQRTSAE AKIIVQTTSE VDLLDDGYRW RKYGQKVVKG  420
NPHPRSYYKC TYAGCNVRKH IERASSDPKA VITTYEGKHN HEPPVGRGNN QNAGNAAPSS  480
SSQQNMQNLS SNQASLTMAD FNNINQRPIG VLQFKSEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-38238464877Probable WRKY transcription factor 4
2lex_A1e-38238464877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317590.0AL731759.2 Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620542.10.0probable WRKY transcription factor 3
TrEMBLA0A0E0MMT10.0A0A0E0MMT1_ORYPU; Uncharacterized protein
STRINGOPUNC12G11920.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-100WRKY DNA-binding protein 3