PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G12060.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 222aa    MW: 24952.8 Da    PI: 4.7676
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G12060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-101471861054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++RR+riN+++  L+el+P+      +K++ +++Le A++Y+k L
  OPUNC12G12060.1 147 KKRRQRINERLRILQELIPNG-----TKVDISTMLEGAIQYVKFL 186
                      9******************97.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.361137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-13140201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-11142197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-9143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.20E-10146191No hitNo description
PfamPF000101.5E-7147186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
METEDMEASC CISLEAICEE SEMIAHLQSS FWSSSDADPC FGSSSNSFSL SSSSRFSLIS  60
GESYDTMTTE LVNSRTTACL EYQDDSFVST EKTSIGNKRR IQIDDEHEQV MNLSKEVRTA  120
MSVPGKEGNR SKACKQSAEN SQSHYAKKRR QRINERLRIL QELIPNGTKV DISTMLEGAI  180
QYVKFLHLQI KLLSSDEMWM YAPLAFDGVN NSLHQNSSLS QE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619477.23e-98transcription factor SPATULA isoform X1
TrEMBLA0A0E0MMV21e-163A0A0E0MMV2_ORYPU; Uncharacterized protein
STRINGOPUNC12G12060.11e-164(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145082123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-37ROOT HAIR DEFECTIVE 6-LIKE 2