PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G15300.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 362aa    MW: 40101.8 Da    PI: 6.8083
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G15300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-057492523
                     TTTEEESSHHHHHHHHHHT CS
          zf-C2H2  5 dCgksFsrksnLkrHirtH 23
                      C+k+Fs++ +L+ H+++H
  OPUNC12G15300.1 74 MCSKVFSTSKSLREHMMMH 92
                     6****************99 PP
2zf-C2H212.20.00055274294121
                      EEETTTTEEESSHHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                      ++C+ CgksF +   L  H+r
  OPUNC12G15300.1 274 HRCNTCGKSFGSGQALGGHMR 294
                      79********99999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.571032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
PfamPF139128.0E-81234IPR007087Zinc finger, C2H2
SMARTSM00355127092IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.71E-87392No hitNo description
Gene3DG3DSA:3.30.160.607.3E-47596IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139120.057589IPR007087Zinc finger, C2H2
SuperFamilySSF576671.71E-8269296No hitNo description
Gene3DG3DSA:3.30.160.602.9E-4274296IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.018274296IPR015880Zinc finger, C2H2-like
PfamPF139124.4E-11274297IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.554274296IPR007087Zinc finger, C2H2
PROSITE patternPS000280276296IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAPRGKPQKH FCIKCDKRFR SGNALGGHMS CHWRVENQLK STSSPPTVVD LHMPLLSSCD  60
DNHLLLSPET QRQMCSKVFS TSKSLREHMM MHGVEKVVVK AEEEAAGLIE ALGIADSMQD  120
VMVFSSVKRK RSFRSKRQTP ALSLEEIEAA DALLLLSGCF DKTSAYEDCY LGDIEDSSLG  180
SIVLTEVNMN ALDHCSVQSV DSKKPINDNN SAYKDCYGQS DKGNCLTVPK EEMDLNDFDH  240
ELVRDAALRT PRTDNSDEEM KFGDLSAAMK DNNHRCNTCG KSFGSGQALG GHMRCHYVWK  300
CNRHKGVADR AGSVLMKVQK LKLRLDPILL DVTLPALTDG DCCISVGVKP EPQLWCVTSN  360
LQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9287740.0AL928774.3 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619008.10.0uncharacterized protein LOC4352630 isoform X1
TrEMBLA0A0E0MNZ90.0A0A0E0MNZ9_ORYPU; Uncharacterized protein
STRINGOPUNC12G15300.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.14e-08zinc-finger protein 3