PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G15600.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 250aa    MW: 25801.1 Da    PI: 7.0756
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G15600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0007197119123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cgk F +   L  H  +H
  OPUNC12G15600.1  97 HRCSVCGKAFASYQALGGHKASH 119
                      79**********99998888877 PP
2zf-C2H210.90.0014157176120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C+ Cgk F++   L  H 
  OPUNC12G15600.1 157 HECNVCGKAFPTGQALGGHK 176
                      78*********988886665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.02397119IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.36597124IPR007087Zinc finger, C2H2
SuperFamilySSF576673.6E-1097119No hitNo description
PfamPF139125.7E-1397121IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SuperFamilySSF576673.6E-10152179No hitNo description
PfamPF139122.5E-13156181IPR007087Zinc finger, C2H2
SMARTSM003550.063157179IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-5157179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.388157179IPR007087Zinc finger, C2H2
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAVEAVLEAA TVVAPSPDRE VAAAAAAARS SSEEEAEVIG GGQVEAGWGK RKRSRRRRGQ  60
QQQQLPPTEE EYLALCLLML ARGRRDGDGD DVAAVEHRCS VCGKAFASYQ ALGGHKASHR  120
KPPPAAMVDE EVVEMKPAIA TPSSSASGVS GGGVRAHECN VCGKAFPTGQ ALGGHKRCHY  180
DGTIGSAAAG ASKPAAKTVA APASRGFDLN LPALPEVVGD QRCTAEAAAA EDDEVLSPLA  240
FKKPRLMIPA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2889631e-161AK288963.1 Oryza sativa Japonica Group cDNA, clone: J090084H09, full insert sequence.
GenBankAL7724271e-161AL772427.4 Oryza sativa chromosome 12, . BAC OJ1260_B01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-161AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCT8416081e-161CT841608.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105H24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620192.15e-83zinc finger protein 1
SwissprotQ424305e-44ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0E0MP331e-178A0A0E0MP33_ORYPU; Uncharacterized protein
STRINGOPUNC12G15600.11e-179(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.24e-31zinc-finger protein 2