PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G15670.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 397aa    MW: 42070.9 Da    PI: 6.7949
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G15670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.3e-32242297156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+peLH+rFv a+++LGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  OPUNC12G15670.1 242 KARRCWSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 297
                      68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.583239299IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-29240300IPR009057Homeodomain-like
SuperFamilySSF466892.75E-17240300IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-26242297IPR006447Myb domain, plants
PfamPF002493.3E-7244295IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MMGSSSAAAR EDAAAFVLGG VDMRMLAART ATGALARAAG GEVGEKAARF EECIRSLEAE  60
KAKMEVFRRE LPISVHLIAD VIEWLKDEVE KQRLRRREML APPATAKRKA AAAEGVKAEA  120
EADANDKRSW MSSAQLWSCG SHTSTSNSNG GSVKKQQQQH KVSNAFMPLA TSPAFAKSPE  180
KAVGAATAMP LPAAVPDLSL SSPAVTTDAP ACPAAPSATS SAVTDVAGAQ RQQQQQQAVQ  240
RKARRCWSPE LHRRFVAALQ RLGGPQAATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR  300
ASDGGGGGGG DHQMAGGGLW PPPPEQYTTS QHSTSQSGSP QGPLQLTMSS SHAVSVTAGD  360
SCDGGEEEEE VEEEEEDGKS ESYSWEMQNG ARASSSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-14242295255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-14242295255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-14242295154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-14242295154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-14242295154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-14242295154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-14242295255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-14242295255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-14242295255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-14242295255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-14242295255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-14242295255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126209e-81CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618787.11e-174transcription factor HHO6
TrEMBLA0A0E0MP440.0A0A0E0MP44_ORYPU; Uncharacterized protein
STRINGOPUNC12G15670.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-28G2-like family protein