PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G15840.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 377aa    MW: 40660 Da    PI: 7.4274
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G15840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.31.4e-2294138246
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 
                      pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+h+
  OPUNC12G15840.1  94 PRMRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHM 138
                      9*****************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-892137IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-1892138IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-1494137IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MSTTTAATPQ PSSSSSDEAA TAMAPDLSLH ISPPSPAPPA EPRLELGLAD DSATAAKTTS  60
GDERRRRHQP IQTAHGFKKS SAGGGGGKRS ARAPRMRWTT ALHAHFVHAV ELLGGHERAT  120
PKSVLELMNV KDLTLAHMYR TVKGTDRSCV AGHGQASREM GFLMRRGLVA EVDSFDGFNN  180
NNNNMVNTTS NNTTARKSQS PGEQRLQDLQ SGWPPPHYLA SSESDHLLME QRLMQEIWKG  240
AAAAAAHDHH DHEAAAALHH DQHGGRLEQI FAGRPPPASN NASSSSGDTM ASSLDWLLAS  300
RRQKQHKYGE HEDSYYDTTH RDQAAAAMST AAAAAASGVK DRPSLEMSLG RQGWEITMEQ  360
RSSVESSSKE LTLLKCL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097271e-159AK109727.1 Oryza sativa Japonica Group cDNA clone:002-146-B09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618990.11e-174uncharacterized protein LOC4352677
TrEMBLA0A0E0MP630.0A0A0E0MP63_ORYPU; Uncharacterized protein
STRINGOPUNC12G15840.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.22e-25G2-like family protein