PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G16230.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 311aa    MW: 33157.8 Da    PI: 4.7393
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G16230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08185212330
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   3 rahnerErrRRdriNsafeeLrellPka 30 
                      ++h   E+rRR++iN++f  L++l+P +
  OPUNC12G16230.1 185 ETHGLTEKRRRSKINEKFKMLQQLVPGC 212
                      579999********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.02E-7169216No hitNo description
Gene3DG3DSA:4.10.280.105.3E-10180214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-8180216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.019182234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-6186212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MMSFPYSSGD LGEAAAAAAA VDITLDQMFQ DYDGSTYVYL ELVHDLMHAY SISGVLINTN  60
LVCYSDDDLF EFVWESCGGG EVDGGAGEMQ HAAGVPCCHR LLPGSAPEPP SEDEMAAWLS  120
TIVTGSGGGS DDVRDAVNMA AGDHQDPAVK PDGEPLTEKI DKRLPTRTEE RRAKHKARRN  180
PRYAETHGLT EKRRRSKINE KFKMLQQLVP GCDKLSLRAV EPILDTGPDS PLHEVTAAAT  240
PGNVSDDSDE VSSRVPRRAA TAVGAAGGGR RRRRTAIAGW WSPSTTGAGV SVGDDGDACG  300
GASIDLSFVH W
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269274RRRRRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619633.13e-82transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
TrEMBLA0A0E0MPB20.0A0A0E0MPB2_ORYPU; Uncharacterized protein
STRINGOPUNC12G16230.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165781111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.12e-10bHLH family protein