PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G16260.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 298aa    MW: 31597.9 Da    PI: 7.0184
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G16260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.56.5e-15146193355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++h+  Er+RR  iN+++ +L++l+P +      K + a++L k+++Y+ksLq
  OPUNC12G16260.1 146 QTHSLTERKRRCTINEKLKTLQQLVPGC-----DKSNQASTLDKTIRYMKSLQ 193
                      79*************************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-17141203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.999143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-13146193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.35E-14146197No hitNo description
Gene3DG3DSA:4.10.280.101.3E-17147200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-14149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MANCYNDIDA GDMFVASDDY SAGGGGAGDL FDMVWPGRRR RRGEDNTGGC LPLSPPPPDV  60
LLPSGDEIPM AAWFYPPTVR DEELAVDQLP AGGDGGGGGH VVGVEDQPVA VAEDDSGERR  120
TEKGTRSESI NERKTSRARR SSRYSQTHSL TERKRRCTIN EKLKTLQQLV PGCDKSNQAS  180
TLDKTIRYMK SLQQHVQAMS VGCSMKPAAA AAAAGVSYPF LQPPPYVRPA IAAGATAPAG  240
MVPRPPPSMV PFAGPPVLPL VVHHPAPLMM MPAPAPLMIY PAAGVAGPSN ITAERMKD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126204e-67CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0MPB60.0A0A0E0MPB6_ORYPU; Uncharacterized protein
STRINGOPUNC12G16260.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164341012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.18e-20phytochrome interacting factor 3-like 5