PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G16260.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 276aa    MW: 29039 Da    PI: 6.1327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G16260.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.1e-09146173330
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   3 rahnerErrRRdriNsafeeLrellPka 30 
                      ++h+  Er+RR  iN+++ +L++l+P +
  OPUNC12G16260.2 146 QTHSLTERKRRCTINEKLKTLQQLVPGC 173
                      79************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-8141178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.248143200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-8143178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-6146177No hitNo description
PfamPF000101.0E-6146173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MANCYNDIDA GDMFVASDDY SAGGGGAGDL FDMVWPGRRR RRGEDNTGGC LPLSPPPPDV  60
LLPSGDEIPM AAWFYPPTVR DEELAVDQLP AGGDGGGGGH VVGVEDQPVA VAEDDSGERR  120
TEKGTRSESI NERKTSRARR SSRYSQTHSL TERKRRCTIN EKLKTLQQLV PGCDKAMSVG  180
CSMKPAAAAA AAGVSYPFLQ PPPYVRPAIA AGATAPAGMV PRPPPSMVPF AGPPVLPLVV  240
HHPAPLMMMP APAPLMIYPA AGVAGPSNIT AERMKD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126203e-67CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0MPB70.0A0A0E0MPB7_ORYPU; Uncharacterized protein
STRINGOPUNC12G16260.11e-161(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.13e-10bHLH family protein