PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G16280.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 373aa    MW: 39430.7 Da    PI: 7.3903
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G16280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.8e-13194240455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ahn  E+rRR +i +++ +L++l+P +      K + a++L ++++Y+ksLq
  OPUNC12G16280.1 194 AHNLTEKRRRFKITERLRTLQRLVPGC-----DKSNQASTLDQTIQYMKSLQ 240
                      8*************************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.262190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-16194247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.31E-12194244No hitNo description
SuperFamilySSF474591.31E-15194252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-11194240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-12196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MNRQDPEAAG FFTDDDSDQT TAIAAAAAAA MENEDFSYML REFDYYTSSE DLFELMWQGG  60
RGDSSFEQPP PPLPPGIIAP GTTTTTTTLL PEQPVVDDHL PAAAPPSEEK MAAWLYPIVS  120
GHEVAGGRRS PEAEDDRRAA LPEKKQMENM PAAASLTTTM NKDEASDDSG ERKKKASSAA  180
GGKASSRHHH VAGAHNLTEK RRRFKITERL RTLQRLVPGC DKSNQASTLD QTIQYMKSLQ  240
HQLKAMSVVG SPPAVLYPAA VHPQSYMHPP PPVAGAAAPV TMPMPAGMVL AAPPGAAAPL  300
GPPATMVPFG AMLPYPPYPA VLLPPPPPPP PATLYGRPAA AAPSVAPAAA RRHGSSSGGR  360
ISKSSSSSLR KKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203EKRRRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7325351e-118AL732535.4 Oryza sativa chromosome 12, . BAC OSJNBa0035N13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-118AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126201e-118CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619315.18e-99transcription factor APG
TrEMBLA0A0E0MPB90.0A0A0E0MPB9_ORYPU; Uncharacterized protein
STRINGOPUNC12G16280.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-17phytochrome interacting factor 3