PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G16380.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 274aa    MW: 30386.3 Da    PI: 7.0568
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G16380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.8e-15110160255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      g++G++ +k  grW+AeIrd      ++  r ++g+f+taeeAa+a++aa+++++g
  OPUNC12G16380.1 110 GFHGIHCRK-GGRWAAEIRD----SlIKgYREWVGTFDTAEEAARAYDAAARRIHG 160
                      899**9777.9*********....55334999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.8E-25110174IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-20110169IPR016177DNA-binding domain
PROSITE profilePS5103219.638110168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-24111169IPR001471AP2/ERF domain
PfamPF008471.1E-8111160IPR001471AP2/ERF domain
PRINTSPR003675.6E-5111122IPR001471AP2/ERF domain
PRINTSPR003675.6E-5134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MCGGNDVTDA ATGCRRLRGP GDEEQEEHEV VVTDDDDDDY QELEDEFRRY CERGAKMLPT  60
KAFTNIHIVT PKRTFYSAVQ SVKDRRAKKS MKDVAADDKG GRPAARKKHG FHGIHCRKGG  120
RWAAEIRDSL IKGYREWVGT FDTAEEAARA YDAAARRIHG SNARTNFPHP PPAPADEIKK  180
KPVVPAPVVA RKKMKRKKPV VEALAAAAEM VAPAGELAPV LLGHALEATN GWEFEPYSMG  240
FVDKYTDEPD ELQLLHLHGG AMINFATDGC LWSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1598169273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178197KKKPVVPAPVVARKKMKRKK
2179196KKPVVPAPVVARKKMKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664718.22e-37PREDICTED: dehydration-responsive element-binding protein 1B-like
TrEMBLA0A0E0MPD00.0A0A0E0MPD0_ORYPU; Uncharacterized protein
STRINGOPUNC12G16380.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156151014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.21e-10related to AP2 2