PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G17090.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 339aa    MW: 35604.2 Da    PI: 10.1083
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G17090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.12.6e-33471891110
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec..eaesssssa 82 
                      aag+kdrhsk+ T++g+RdRRvRls+++a+ f+d+qd+LG+d++sk+ieWL+++a  ai++l+++          ss++as+    +++++s++
  OPUNC12G17090.1  47 AAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKAIEWLIRAAASAIDALPSLdcsfvlptaaSSPPASSPppVDDAEVSTS 140
                      6899********************************************************************9986666655554233333333 PP

              TCP  83 snsssg......................kaaksaakskksqksaasalnl 110
                      ++s+ +                       ++++++ sk+ q+s++++l++
  OPUNC12G17090.1 141 ETSK-SsvlslanapcdnganggafaelLHCSTTNGSKPLQNSQQATLAY 189
                      3233.236777777788888888888884444444333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.9E-3249172IPR005333Transcription factor, TCP
PROSITE profilePS5136931.5750108IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEEVVVGKER KRPRGALVAV GGGGSGASAA TAAAATAWRT SRVARAAAGG KDRHSKVVTS  60
RGLRDRRVRL SVPTAIAFYD IQDRLGVDQP SKAIEWLIRA AASAIDALPS LDCSFVLPTA  120
ASSPPASSPP PVDDAEVSTS ETSKSSVLSL ANAPCDNGAN GGAFAELLHC STTNGSKPLQ  180
NSQQATLAYY AAAQSAHMAA PMSFEMMAMP HLAFSQEQQH ATVAAFDRGT LQSNAVAASL  240
WPPPPPSSQH PCLLQRFAAA PAEAALLLLL RRRQPMRGSG GCSSGTSRRR GRHDRLILGE  300
LPGVMSGVVP QVIANQHEEK NQNKKKYPGT EDDVSTRKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2155109155Putative transcription factor PCF6
5zkt_B4e-2155109155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0004570.0BX000457.2 Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877606.11e-106transcription factor PCF8
SwissprotA2ZMR91e-113PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A0E0MPM30.0A0A0E0MPM3_ORYPU; Uncharacterized protein
STRINGOPUNC12G17090.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-28TCP family protein