PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G17340.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 206aa    MW: 22686.7 Da    PI: 9.0413
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G17340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY236.75.2e-7361765170
            YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.....lleelkveeenlksnvekeesas 93 
                        seqvCyv+CnfCntilavsvP +s++++vtvrCGhCt+llsvnl+  ++  +a ++ +++l+e+       ++ +  e  ++   ++++   
  OPUNC12G17340.1   6 APSEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHHLQESslsgcFRDQSGYPEFGFSAASSSSKLRL 99 
                      679************************************************9999887777777776665566666666666777777777777 PP

            YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         ++ ++s +++++  ++    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  OPUNC12G17340.1 100 PPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 176
                      77777888888888888777789****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.2E-747176IPR006780YABBY protein
SuperFamilySSF470952.88E-8121170IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.3E-5123170IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSAQIAPSEQ VCYVHCNFCN TILAVSVPGN SMLNIVTVRC GHCTNLLSVN LRGLMHSAPA  60
LQDHHHHLQE SSLSGCFRDQ SGYPEFGFSA ASSSSKLRLP PAAAAMVSYS QQNQQLEQAL  120
HARPPEKRQR VPSAYNRFIK EEIRRIKANN PDISHREAFS TAAKNWAHYP NIHFGLSPGH  180
EGGKKLVDVD PIPTAPSSKK IQGFYS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740180.0AB274018.1 Oryza sativa Japonica Group OsYABBY6 mRNA for OsYABBY6 protein, complete cds.
GenBankAK1049180.0AK104918.1 Oryza sativa Japonica Group cDNA clone:001-047-F07, full insert sequence.
GenBankCT8291390.0CT829139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051K22, full insert sequence.
GenBankFJ9401950.0FJ940195.1 Oryza sativa Japonica Group clone KCS385G10 YABBY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618575.11e-141protein YABBY 6
SwissprotQ2QM171e-142YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A0E0MPQ41e-152A0A0E0MPQ4_ORYPU; Uncharacterized protein
STRINGOPUNC12G17340.11e-153(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.28e-59YABBY family protein