PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G18270.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 645aa    MW: 71706.8 Da    PI: 6.0499
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G18270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.7e-094044411954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  OPUNC12G18270.1 404 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 441
                      665559******************************88 PP
2BELL121.63.4e-39267338172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e+qelq+k akL+ +l+eVd++Yk+y++q+qtv+ssF++vag gsakpYt++Al++iSrhFrcLkdai +qi
  OPUNC12G18270.1 267 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQTVVSSFDVVAGPGSAKPYTAVALQTISRHFRCLKDAINDQI 338
                      689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.3E-59192336IPR006563POX domain
PfamPF075261.1E-51198334IPR006563POX domain
PROSITE profilePS5007112.325382445IPR001356Homeobox domain
CDDcd000866.01E-12385446No hitNo description
SMARTSM003893.6E-9385449IPR001356Homeobox domain
SuperFamilySSF466892.87E-17386451IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-28388451IPR009057Homeodomain-like
PfamPF059201.0E-17402441IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MATYYSSPGS ERDSQTMYSR DPGSASYPMS SALGNLLYLN NPSSGPYTEF SGILQPQQNC  60
MEMPGHASAM SQDPSSRESD MLASHQGQRS FGHVKDMKNE MLMHMMDGAQ GSGSELIHDD  120
AHTGSQLEFG VLNNHNSSSV PSVQSQGLSL SLNTQIMAPS LPYWSIKPDM LTPQSYHDSL  180
RGDDMRMKNL QSEASRAIRN SRYLKAAQEL LDEVVSVWKS IKQKAQKEKA ESGKADGKET  240
DGGPKSEGTS NPQESGANAA PELSTAEKQE LQNKMAKLMA MLDEVDRKYK HYYHQMQTVV  300
SSFDVVAGPG SAKPYTAVAL QTISRHFRCL KDAINDQINV IRKKLGEEEN SSGKEGKLTR  360
LRYIDQQLRQ QRAFQQYGMI PQNAWRPQRG LPENSVTILR AWLFEHFLHP YPKDSEKLML  420
ARQTGLTRSQ ISNWFINARV RLWKPMIEDM YKEEIGDLEQ DSNSSSDNAP RSKDKMASSE  480
DKEDLKNSRA RICETSQLSE SRTSIGGMNV GGAPVGFQNE PNPDDSFMNL MLKDQRSNEA  540
DGSLLLHNTA AQQSDENARF MAYHLAELGR YGNGNVSLTL GLQHSSSNLG VPNAQPGFPG  600
VSEDDIYNAT APLGVTIASS DYDSMNQMDQ RQRFEHSPLL HDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-16391448158Homeobox protein Meis1
4xrs_B4e-16391448158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704650.0AK070465.1 Oryza sativa Japonica Group cDNA clone:J023054P21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619822.10.0BEL1-like homeodomain protein 7
RefseqXP_015619823.10.0BEL1-like homeodomain protein 7
RefseqXP_025878002.10.0BEL1-like homeodomain protein 7
TrEMBLA0A0E0MQ150.0A0A0E0MQ15_ORYPU; Uncharacterized protein
STRINGOPUNC12G18250.10.0(Oryza punctata)
STRINGOPUNC12G18270.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-112BEL1-like homeodomain 6