PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0005200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 228aa    MW: 24613.7 Da    PI: 9.9823
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0005200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.8e-0942109455
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C..................TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.as...............kapskKlsKaeiLekAveYIksLq 55 
                          + +E++RR +++    +L +l+P  a+               + +++ ++  + Le+A  YIk+L+
  ORGLA01G0005200.1  42 ERKDVEKNRRLHMKGLCLKLSSLIPAaAPrrhhhhystssssppSSTKEAVTQLDHLEQAAAYIKQLK 109
                        56899*********************555*************76666666****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.58538108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-940121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-1140122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-642108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.003644114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MKSRKNSTTS TKAAGSCHTS SSGGGGGGGG GNCYSSSSSK MERKDVEKNR RLHMKGLCLK  60
LSSLIPAAAP RRHHHHYSTS SSSPPSSTKE AVTQLDHLEQ AAAYIKQLKG RIDELKKRKQ  120
QAAALTTSTS NGRGGGMPVV EVRCQDGTLD VVVVSEAIGE ERERERERAV RLHEVIGVLE  180
EEGAEVVNAS FSVVGDKIFY TLHSQALCSR IGLDASRVSH RLRNLLQY
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0005200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8347290.0CT834729.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622948.11e-118transcription factor bHLH168
TrEMBLA0A0D3EIR31e-165A0A0D3EIR3_9ORYZ; Uncharacterized protein
TrEMBLI1NJL21e-165I1NJL2_ORYGL; Uncharacterized protein
STRINGORGLA01G0005200.11e-166(Oryza glaberrima)
STRINGOBART01G00620.11e-166(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.11e-18bHLH family protein