PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0034700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 239aa    MW: 26120.1 Da    PI: 10.1129
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0034700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.7e-115094554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       h+e+ErrRR+riN  + +Lr+++P       k ++Ka+ L ++v+ +k+L
  ORGLA01G0034700.1 50 HSEAERRRRERINAHLTTLRRMIPDT-----KQMDKATLLARVVDQVKDL 94
                       9************************9.....67***********999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1336103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.7614594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-1349104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-85094IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1151100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.04140218IPR002912ACT domain
SuperFamilySSF550212.9E-5142202No hitNo description
Gene3DG3DSA:3.30.70.2604.9E-6142204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAECQPLQLQ EGPILLPRQA NSAPPAVPPE MSSSSGSGRS ATEARALKIH SEAERRRRER  60
INAHLTTLRR MIPDTKQMDK ATLLARVVDQ VKDLKRKASE ITQRTPLPPE TNEVSIECFT  120
GDAAAAATAV AGNHKTLYIK ASISCDDRPD LIAGITHAFH GLRLRMVRAE MTSLGGRVQH  180
VFILCREEGI AGGVSLKSLK EAVRQALAKV ASPELVYGSS HFQSKRQRIL ESHCSIMSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15358ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0034700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8315680.0CT831568.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN107N12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623162.11e-148putative transcription factor bHLH107
TrEMBLI1NKF71e-174I1NKF7_ORYGL; Uncharacterized protein
STRINGORGLA01G0034700.11e-174(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.16e-28basic helix-loop-helix 32