PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0044300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 282aa    MW: 30117.2 Da    PI: 8.4806
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0044300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-075681126
                       --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                       ykt+ C +f  +G C + d C+FaHg
  ORGLA01G0044300.1 56 YKTRVCETFVTSGRCMFEDGCTFAHG 81
                       9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-145087IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-95487IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.455583IPR000571Zinc finger, CCCH-type
SMARTSM003560.00165582IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-45681IPR000571Zinc finger, CCCH-type
SMARTSM003560.42137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.206137165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4140162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-5140163IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAGRGGMEWE VGRRRDAEDV IVLSPGPPAR RRPPPVKAVE PDSGGFAYEP PEKLFYKTRV  60
CETFVTSGRC MFEDGCTFAH GDEELRPSLT ACAGGWRKPS PSLAAPPVAV AVAPTPPPAQ  120
VVHELLARGS GSGGGHRAIT KVCFEFRDKG TCYFGETCAF PHVSAAEIRQ GSRLSSMSSS  180
SWEMPARRSV AVTVPRTFVS VPPVAPPPPP PHYRVNNNSS SSSGYNAASM AAAAPPAASD  240
ANLVAQQPPP EQGGRKMTRL EMLSLKKMTG IYGDWLEGYE HP
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0044300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076620.0AK107662.1 Oryza sativa Japonica Group cDNA clone:002-131-G11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622143.11e-135zinc finger CCCH domain-containing protein 1
SwissprotQ5VR071e-136C3H1_ORYSJ; Zinc finger CCCH domain-containing protein 1
TrEMBLI1NKQ30.0I1NKQ3_ORYGL; Uncharacterized protein
STRINGORGLA01G0044300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]