PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0050200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 238aa    MW: 25170.1 Da    PI: 4.0098
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0050200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC34.64.2e-111151981799
              NF-YC  17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr.tdifdflvdivprd 99 
                        ++ +lPl r+k+i+++d d+k+++ ea  l++ a elf+  l+  +                + aa  +   + dfl+d  p  
  ORGLA01G0050200.1 115 QRPALPLGRVKRIIRVDRDIKKVTNEAALLIAAATELFVGSLAAGAHRAXXXXXXXXXXAVHVRAAAREhRPTADFLLDCLPAA 198
                        4668*************************************9999988888888888888888877654156889999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.69E-10117210IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.9E-13119196IPR009072Histone-fold
PfamPF008088.8E-9119162IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAAAAVADEV TEAMEQVEGE REEADAVADE AAEVMEQAEG EREEAIDAVA GEAGEVMEEV  60
VEGEREEANA MADEADEAME PEGEREEEAD AVADEATEPM EQVEGEGEDG DAAAQRPALP  120
LGRVKRIIRV DRDIKKVTNE AALLIAAATE LFVGSLAAGA HRAXXXXXXX XXXAVHVRAA  180
AREHRPTADF LLDCLPAAEE AAPARAAAAG PSRGGGRGEA KPLPRGTRRI DAFFQKTT
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0050200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0024840.0AP002484.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0489A01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879187.11e-116tropomyosin
TrEMBLI1NKW21e-147I1NKW2_ORYGL; Uncharacterized protein
STRINGORGLA01G0050200.11e-148(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133422628