PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0052400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 219aa    MW: 22582 Da    PI: 7.5561
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0052400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.1e-30106164159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDg++WrKYG+K vk+s++pr+YYrC+ agC vkk+ver+ +dp++v++tY g Hnh 
  ORGLA01G0052400.1 106 LDDGFKWRKYGKKAVKSSPNPRNYYRCSAAGCGVKKRVERDGDDPRYVVTTYDGVHNHA 164
                        59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-3193166IPR003657WRKY domain
SuperFamilySSF1182903.79E-2798166IPR003657WRKY domain
PROSITE profilePS5081131.089101166IPR003657WRKY domain
SMARTSM007741.3E-33106165IPR003657WRKY domain
PfamPF031061.8E-23107163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAASLGLCHE TSYAYSYPAS NTSSSLCFPP LMADHIVDGG GGGGCSFGEF LELGHSVYSL  60
PLPPPPSQPV VVAGGNNDQY GVSSSAAAAA TTSRIGFRTR SEVEVLDDGF KWRKYGKKAV  120
KSSPNPRNYY RCSAAGCGVK KRVERDGDDP RYVVTTYDGV HNHATPGCVG GGGHLPYPTS  180
AAPAWSVPAA AASPPPAHAQ AWGAPLHAAA AAHSSESSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2696166777Probable WRKY transcription factor 4
2lex_A1e-2696166777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0052400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0024860.0AP002486.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F03.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY3418540.0AY341854.1 Oryza sativa (japonica cultivar-group) WRKY13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633261.11e-157probable WRKY transcription factor 50
TrEMBLI1NKY41e-157I1NKY4_ORYGL; Uncharacterized protein
STRINGORGLA01G0052400.11e-158(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.18e-38WRKY DNA-binding protein 50